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L2_026_000M1_scaffold_3939_6

Organism: dasL2_026_000M1_concoct_38_sub_fa

partial RP 36 / 55 MC: 3 BSCG 40 / 51 MC: 5 ASCG 12 / 38 MC: 1
Location: 2813..6268

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 1151.0
  • Bit_score: 2269
  • Evalue 0.0
mfd; Transcription-repair coupling factor (superfamily II helicase) (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 99.4
  • Coverage: 1151.0
  • Bit_score: 2265
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG39_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 1151.0
  • Bit_score: 2269
  • Evalue 0.0

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Taxonomy

Ruminococcus sp. CAG:57 → Ruminococcus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3456
ATGAATATTTTTTATGAAATGGCGAGCCGTCTTGGCTTTTATAAAGATGTGAAAAACTGCCTGCTCAAAGGGTTTACCCCTTGTGCGGTCACGGGCGTTTCAAATATACACAAGGCTCAGACCGCAATGGCTCTCAGCAGGCTTTCCCCTTGCCTTGTTATATGCGACGACGAAGCGTCTGCCATTAGAATGACAGGGGATATAAACGAAATGGCTGGGGAACAGCTTGCCTGCGTTTTTCCTGCAAAGGATCTGAACTTTGCATACATGGAGGGCGTTTCAAGAGAATATGAGCATAAAAGGCTGGAAGCTCTCTCACTTATCACTCAGGGCAAATGCAAGATAATCGCCGCAAGTATGGAAGCTTGCTTGCAGGGAACTATTCCGCAGGATAAGCTGAAAGAGTTTTCCTTTGAGATAAAAACAGGGGGCGAACTGAGCCTTGAGGAGCTTACAAGCAAGCTTCTTGCAGGCGGATATACAAGAACAGATCAGGTGGAGGGTCAGGCGCAGTTTTCTGTGAGAGGCTCTATCGCCGATATTTTCCCTGTGCAGGAGTCACGTCCTGTGAGAATAGAGCTTTGGGGCGACGAGGTTGACTCTATATCATACTTTGACCCCGAAAGCCAAAGACGTACCGACCCAATAGACGAGATAATGGTTTTCCCTGCCTTGGAGATAATTTTCCCTGACACTGATGACCTTGTGACAAAGCTTGAAGCCTTGTCGAAGTCTGTTCGTGGAAGCCGTACCGATAAGATAAGAACGAATATTTCAAGGGATATAGAAACGGCTCAGAGCGGTATCACGCTCACAAATCTTGATAAGTATTATACTGTGTGCTATGACAGGCTCACAACTATTTTTGACTATTTTCAAAGCGGTGTTTGCCTTGTGTCGGAGTATACCAACTGTATCGAAAAGGGCAAGGCGGCTCTTGCTCAGCTTTCAGAGGATATGAAGCTTCTTTATGAGGACGGCATACTTTTCAGAAAGCTGGAGGGCTTTTATCTTGATATACCACAAGCGGAACTAAAAATAACACAAATGAAGTCAGTGTTTCTTGACAGCTTTATGCGCTCTAACAACGGCGTGAAGTTCAAAAAGCTTATCAATACCGACTGCCGACAAACGGCGGCTTGGGGCGGTAATATCATCAATCTTGAAGAAGAACTGAAAAATCTCTGCTCTCAGGGGTATTGCACTGTTGTGCTGGCAGGCTCGGAAAAGACGCTTCCTATTATAAATAAAGACCTTAATGATGCTGGCATCTCTGCGGAGATCCTCACTGAGGACAGCGAGATAATAAAGGGTAAAGTATACCTGCGCACGGGCTGTCTGTCAGGTGGCTTTGATTATCCTGACATAGGCTGTGCGGCTATCACTCAGATGAAAGCCATGAGTGCAAAGAAGCGTAAATCCCGTCACAAGGCAGGAGAAGAGATAAAAAGCCTTTCGGATATACAGACAGGCGACCTTGTTGTTCACGCTATGTACGGCATAGGCAGATTTTCAGGAATAAAAAATATAGAAACGAACGGTGTAACCAAGGATTATATCACCATAAAATATGCAGGCACGGACGTGCTTTATGTGCCTGTTACTCAGCTTGACCTTGTGTCAAGATATATAGGTCCGAGAGATGACGGGGCAGTGAAGCTTAATAAGCTCAACTCTATGGAGTGGACTAAGACACGAAACAAGGTAAAGTCTGCCGTAAAGGATATGGCGGAGGAGCTTACAAAGCTTTATGCTCAAAGACAAATGGCAAAGGGTTTTGCTTTTTCACCTGACAACGATTGGCAGGCAGATTTTGAGGAGCGTTTCGACTATCAGGAAACTGACGATCAGTTAAGATCTATACAGGAGATAAAGACAGATATGGAAAAGCCGTCCCCAATGGACAGACTTCTCTGCGGAGACGTGGGCTTCGGCAAAACGGAGGTGGCTCTCCGTGCGGCGTTCAAGTGTATGCTCGATAACAAGCAGGTGGCTATACTTGTGCCAACAACTGTTCTTGCATGGCAGCATTATCAGACGGCGATAAAAAGATTTGAGCATTTCCCGGTGAAGGTGGAGCTTTTGTCGAGATTTAGAAAACCAAAGGAGCAACAGCAGATAATAAGAGAGCTTAACCGTGGCACTATCGACCTTATTATAGGCACGCACAGGCTTGTGCAGAAAGACGTTAAGTTCAAGGACTTGGGCCTTGTTATCATAGACGAGGAACAGCGTTTTGGTGTTGCTCATAAGGAAAAGTTCAAGGAAACTTTCAAGGGCGTTGATGTGCTTACACTTTCGGCTACCCCGATACCAAGAACGCTTAACATGGCAATGAGCGGTATCAGAGATATGTCGGTCATAGAAGAGCCTCCTATGGACAGACACCCTGTTCAGACCTATGTTATAGAGCATAATATGGGCGTTATAGCGCAGGCCATAAGCAAGGAGCTGCGACGTGGCGGTCAGGTGTATTATATCCACAACAGGGTGGAAACTATCATGATGACCGCAAATAAGCTTCAAGAAATGCTCCCTGACGCAAGGATAGCGTTCGCGCACGGACAAATGCCCGAGGAGGAACTGTCGGAAATATGGCGGCAACTTTGCGACAGAGAGATAGATATACTGGTCTGCACCACCATAATCGAAACAGGTGTTGACGTGCCGAATGTAAATACACTTATAATAGAGGACGCTGACAGATTAGGACTTTCACAGCTTTATCAGCTCCGTGGACGTGTGGGAAGATCAAACCGCCGTGCTTTTGCGTACTTCACTTTCAGACGTGGCAAGGTACTCACGGAGGTAGCGGCAAAAAGGCTTGATGCAATAAGAGAGTTCACACAGTTCGGCTCAGGTTTCAGGATAGCGTTGCGTGACCTTGAAATAAGAGGTGCAGGCTCTATACTCAGCGGTAAACAGCATGGACATATGGAAGCGGTGGGATATGATATGTATCTGCGACTTCTAAATGAGGCTATAGCTGAACAAAAGGGAGAGGCTCTGCCACCGTCACCTGAGGATTGTTTGGTGGATATATCCATAGACGCATTTATACCTGACCATTATATAGAAAATCTGTCACAGAGGATAGATTGCTATAGGAAGATAGCTTCCATAGGCAATGAGGAGGATTCCAGGGACGTTATCGACGAGCTTATAGATAGATACGGCGATCCACCGAAATCGGTGCTGGGATTGGTGAACGTTGCACTTACGAGAAATACTGCTTCAAAGCTTGGCATAAAGGAAATAACACAAAGAGGGGATAAGGTGCTGTTCTTTGTGAAAACCGCAGAGGTGGAGCAGATACAAGCGTTGTATGGAGCTTATAAAAATAGGATACGTTTCTTTGACGGAGATAAGCCGTATTTTGCGGTGACGTTGGAGAAAAAGCAGAAAGCGGCAGAATTAATGGCGGAAACGGTAAGATTAATGAGGAATGAGGAGTGA
PROTEIN sequence
Length: 1152
MNIFYEMASRLGFYKDVKNCLLKGFTPCAVTGVSNIHKAQTAMALSRLSPCLVICDDEASAIRMTGDINEMAGEQLACVFPAKDLNFAYMEGVSREYEHKRLEALSLITQGKCKIIAASMEACLQGTIPQDKLKEFSFEIKTGGELSLEELTSKLLAGGYTRTDQVEGQAQFSVRGSIADIFPVQESRPVRIELWGDEVDSISYFDPESQRRTDPIDEIMVFPALEIIFPDTDDLVTKLEALSKSVRGSRTDKIRTNISRDIETAQSGITLTNLDKYYTVCYDRLTTIFDYFQSGVCLVSEYTNCIEKGKAALAQLSEDMKLLYEDGILFRKLEGFYLDIPQAELKITQMKSVFLDSFMRSNNGVKFKKLINTDCRQTAAWGGNIINLEEELKNLCSQGYCTVVLAGSEKTLPIINKDLNDAGISAEILTEDSEIIKGKVYLRTGCLSGGFDYPDIGCAAITQMKAMSAKKRKSRHKAGEEIKSLSDIQTGDLVVHAMYGIGRFSGIKNIETNGVTKDYITIKYAGTDVLYVPVTQLDLVSRYIGPRDDGAVKLNKLNSMEWTKTRNKVKSAVKDMAEELTKLYAQRQMAKGFAFSPDNDWQADFEERFDYQETDDQLRSIQEIKTDMEKPSPMDRLLCGDVGFGKTEVALRAAFKCMLDNKQVAILVPTTVLAWQHYQTAIKRFEHFPVKVELLSRFRKPKEQQQIIRELNRGTIDLIIGTHRLVQKDVKFKDLGLVIIDEEQRFGVAHKEKFKETFKGVDVLTLSATPIPRTLNMAMSGIRDMSVIEEPPMDRHPVQTYVIEHNMGVIAQAISKELRRGGQVYYIHNRVETIMMTANKLQEMLPDARIAFAHGQMPEEELSEIWRQLCDREIDILVCTTIIETGVDVPNVNTLIIEDADRLGLSQLYQLRGRVGRSNRRAFAYFTFRRGKVLTEVAAKRLDAIREFTQFGSGFRIALRDLEIRGAGSILSGKQHGHMEAVGYDMYLRLLNEAIAEQKGEALPPSPEDCLVDISIDAFIPDHYIENLSQRIDCYRKIASIGNEEDSRDVIDELIDRYGDPPKSVLGLVNVALTRNTASKLGIKEITQRGDKVLFFVKTAEVEQIQALYGAYKNRIRFFDGDKPYFAVTLEKKQKAAELMAETVRLMRNEE*