ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 37.44 Longest contig: 467.14 Kbp Bin length: 147.09 Mbp GC content: 44.11 %

Contigs count: 25164 Features count: 151059 rRNAs count: 23 tRNAs count: 2288

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 15

Displaying items 651-700 of 25164 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L2_037_000M1_scaffold_21975 Species: Eggerthella sp. HGA1 (50%)	2	1132 bp	57.51	4.51	100.18
L2_037_000M1_scaffold_21921 Species: Firmicutes bacterium CAG:424 (100%)	2	1135 bp	47.22	4.76	100.18
L2_037_000M1_scaffold_11276 Species: butyrate-producing bacterium SS3/4 (66.67%)	3	2270 bp	50.79	3.57	100.18
L2_037_000M1_scaffold_21778 Species: Eubacterium sp. CAG:274 (100%)	3	1141 bp	32.43	5.52	100.18
L2_037_000M1_scaffold_21788 Species: butyrate-producing bacterium SS3/4 (100%)	2	1141 bp	53.46	4.47	100.18
L2_037_000M1_scaffold_21799 Species: Bacteroides cellulosilyticus (50%)	2	1141 bp	42.07	4.86	100.18
L2_037_000M1_scaffold_14371 Species: butyrate-producing bacterium SS3/4 (100%)	2	1719 bp	53.34	3.84	100.18
L2_037_000M1_scaffold_11168 Species: Coprobacillus sp. CAG:235 (66.67%)	3	2294 bp	32.13	10.72	100.17
L2_037_000M1_scaffold_21415 Species: Clostridium sp. SS2/1 (50%)	2	1159 bp	37.10	17.21	100.17
L2_037_000M1_scaffold_21419 Domain: Bacteria (100%)	3	1159 bp	44.43	4.01	100.17
L2_037_000M1_scaffold_11042 Species: Peptoclostridium difficile (50%)	2	2324 bp	51.33	23.95	100.17
L2_037_000M1_scaffold_21162 Species: Clostridium sp. CAG:299 (50%)	2	1171 bp	46.54	3.33	100.17
L2_037_000M1_scaffold_14050 Species: butyrate-producing bacterium SS3/4 (100%)	2	1764 bp	51.93	4.25	100.17
L2_037_000M1_scaffold_20922 Species: Dysgonomonas gadei (50%)	2	1183 bp	49.87	6.09	100.17
L2_037_000M1_scaffold_13984 Species: Holdemanella biformis (100%)	2	1776 bp	31.93	5.66	100.17
L2_037_000M1_scaffold_20727 Species: Bacteroides cellulosilyticus (100%)	2	1195 bp	44.27	4.52	100.17
L2_037_000M1_scaffold_20686 Species: Bacteroides ovatus (100%)	2	1198 bp	55.51	7.14	100.17
L2_037_000M1_scaffold_20197 Species: Butyricicoccus pullicaecorum (100%)	2	1225 bp	56.90	5.27	100.16
L2_037_000M1_scaffold_20199 Species: Firmicutes bacterium CAG:424 (50%)	2	1225 bp	43.10	3.18	100.16
L2_037_000M1_scaffold_39780 Species: Bacteroides sp. 4_3_47FAA (50%)	2	1228 bp	43.49	10.26	100.16
L2_037_000M1_scaffold_7389 Species: Roseburia inulinivorans (100%)	4	3699 bp	39.47	5.72	100.16
L2_037_000M1_scaffold_20013 Species: Dorea formicigenerans (50%)	2	1234 bp	48.87	4.86	100.16
L2_037_000M1_scaffold_19974 Species: Treponema primitia (50%)	2	1237 bp	63.22	3.52	100.16
L2_037_000M1_scaffold_10449 Species: Bacteroides ovatus (75%)	4	2477 bp	43.28	24.53	100.16
L2_037_000M1_scaffold_19861 Species: Lachnospiraceae bacterium CAG:364 (50%)	2	1243 bp	47.39	4.71	100.16
L2_037_000M1_scaffold_19876 Species: Chlamydia trachomatis (50%)	2	1243 bp	37.09	3.86	100.16
L2_037_000M1_scaffold_19806 Species: Holdemanella biformis (50%)	2	1246 bp	29.13	4.33	100.16
L2_037_000M1_scaffold_13307 Species: Bacteroides cellulosilyticus CAG:158 (50%)	2	1878 bp	44.62	6.63	100.16
L2_037_000M1_scaffold_10338 Species: Parabacteroides merdae (50%)	2	2507 bp	50.94	10.17	100.16
L2_037_000M1_scaffold_6367 Species: Firmicutes bacterium M10-2 (60%)	5	4397 bp	34.73	6.89	100.16
L2_037_000M1_scaffold_19617 Species: Bacteroides vulgatus (100%)	2	1258 bp	47.14	346.74	100.16
L2_037_000M1_scaffold_19619 Species: Alistipes indistinctus (50%)	2	1258 bp	61.53	4.53	100.16
L2_037_000M1_scaffold_19416 Species: Alistipes sp. HGB5 (50%)	2	1270 bp	63.39	5.31	100.16
L2_037_000M1_scaffold_19428 Species: Firmicutes bacterium CAG:424 (50%)	2	1270 bp	45.98	5.43	100.16
L2_037_000M1_scaffold_39822 Species: Anaerotruncus colihominis (50%)	2	1273 bp	52.79	4.01	100.16
L2_037_000M1_scaffold_19314 Genus: Bacteroides (100%)	3	1276 bp	41.22	24.57	100.16
L2_037_000M1_scaffold_19330 Genus: Bacteroides (100%)	3	1276 bp	41.93	24.92	100.16
L2_037_000M1_scaffold_9327 Species: Eubacterium ventriosum (100%)	3	3885 bp	32.66	5.10	100.15
L2_037_000M1_scaffold_18926 Species: Parabacteroides johnsonii (50%)	2	1303 bp	54.03	5.76	100.15
L2_037_000M1_scaffold_18891 Species: Eubacterium hallii CAG:12 (100%)	2	1306 bp	39.66	8.04	100.15
L2_037_000M1_scaffold_18805 Species: butyrate-producing bacterium SS3/4 (100%)	2	1312 bp	51.75	3.43	100.15
L2_037_000M1_scaffold_18579 Species: Bacteroides salyersiae (50%)	2	1327 bp	47.78	5.43	100.15
L2_037_000M1_scaffold_12644	5	1992 bp	32.98	7.08	100.15
L2_037_000M1_scaffold_18492 Species: Alistipes finegoldii CAG:68 (50%)	2	1333 bp	61.74	4.05	100.15
L2_037_000M1_scaffold_18373 Species: Ruminococcus champanellensis (50%)	2	1342 bp	46.57	2.91	100.15
L2_037_000M1_scaffold_12192 Species: Alistipes sp. CAG:268 (50%)	2	2073 bp	65.36	5.86	100.15
L2_037_000M1_scaffold_12169 Species: butyrate-producing bacterium SS3/4 (50%)	2	2076 bp	51.59	4.48	100.15
L2_037_000M1_scaffold_17676 Species: Bacteroides cellulosilyticus (50%)	2	1396 bp	37.97	6.66	100.14
L2_037_000M1_scaffold_17660 Species: Bacteroides sp. 3_1_40A (66.67%)	3	1399 bp	54.32	17.48	100.14
L2_037_000M1_scaffold_7752 Species: Ruminococcus torques CAG:61 (100%)	2	3511 bp	41.21	11.19	100.14

Displaying items 651-700 of 25164 in total

L2_037_000M1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L2_037_000M1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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