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L2_039_362G1_scaffold_180

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_180_1
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..561
DNA (561bp) protein (187aa)
ABC transporter, ATP-binding protein n=2 Tax=Oscillibacter RepID=U2QK60_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK63285.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
ABC transporter ATP-binding protein
L2_039_362G1_scaffold_180_2
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

558..2744
DNA (2187bp) protein (729aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2R341_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK63286.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_039_362G1_scaffold_180_3
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2737..3465
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QX33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK63287.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_039_362G1_scaffold_180_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3476..3736
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01018.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Helix-turn-helix.
L2_039_362G1_scaffold_180_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(3934..5223)
DNA (1290bp) protein (430aa)
GMP synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00008728}; EC=6.3.5.2 {ECO:0000256|SAAS:SAAS00008728};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
GMP synthase (Glutamine-hydrolyzing) domain-containing protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YGI3_9FIRM
GMP synthase
L2_039_362G1_scaffold_180_6
unknown

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5372..5572
DNA (201bp) protein (67aa)

This feature has no annotations

L2_039_362G1_scaffold_180_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5740..8949)
DNA (3210bp) protein (1070aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDR6_9FIRM
L2_039_362G1_scaffold_180_8
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(8949..10031)
DNA (1083bp) protein (361aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
carbamoyl phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XSX1_9FIRM
L2_039_362G1_scaffold_180_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10311..11003
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46960.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_362G1_scaffold_180_10
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

11000..11380
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YC59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12766.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L2_039_362G1_scaffold_180_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11442..12977)
DNA (1536bp) protein (512aa)
Osmoprotectant transport system permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU4_9FIRM
Osmoprotectant transport system permease {ECO:0000313|EMBL:EGJ46990.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative osmoprotectant ABC transporter permease/osmoprotectant-binding protein
L2_039_362G1_scaffold_180_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12974..13600)
DNA (627bp) protein (209aa)
Osmoprotectant transport system permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU5_9FIRM
Osmoprotectant transport system permease {ECO:0000313|EMBL:EGJ46991.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative osmoprotectant ABC transporter permease protein
L2_039_362G1_scaffold_180_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13607..14719)
DNA (1113bp) protein (371aa)
glycine betaine/L-proline ABC transporter ATPase (EC:3.6.3.30)
Osmoprotectant transport system ATP-binding protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU6_9FIRM
Osmoprotectant transport system ATP-binding protein {ECO:0000313|EMBL:EGJ46992.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_180_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14998..16242
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46993.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glycosyl transferase family protein
L2_039_362G1_scaffold_180_15
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16400..16558)
DNA (159bp) protein (53aa)
Rubredoxin n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F288_CLOS4
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
rubredoxin
L2_039_362G1_scaffold_180_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16617..17972)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46994.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative flavoprotein
L2_039_362G1_scaffold_180_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18185..19132)
DNA (948bp) protein (316aa)
TIGR03943 family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCI4_9FIRM
TIGR03943 family protein {ECO:0000313|EMBL:EGJ48295.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative GTPases (G3E family)
L2_039_362G1_scaffold_180_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19146..20318)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48294.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative GTPases (G3E family)
L2_039_362G1_scaffold_180_19
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(20401..22272)
DNA (1872bp) protein (624aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XZJ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15134.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_039_362G1_scaffold_180_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22341..23633)
DNA (1293bp) protein (431aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCI1_9FIRM
L2_039_362G1_scaffold_180_21
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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23908..24957
DNA (1050bp) protein (350aa)
galM; aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Aldose 1-epimerase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KW83_OSCVS
L2_039_362G1_scaffold_180_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25012..25398)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46953.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_180_23
unknown

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25520..25639
DNA (120bp) protein (40aa)

This feature has no annotations

L2_039_362G1_scaffold_180_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25740..27848)
DNA (2109bp) protein (703aa)
Glutamine synthetase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ8_9FIRM
Glutamine synthetase {ECO:0000313|EMBL:EGJ46954.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamine synthetase catalytic region
L2_039_362G1_scaffold_180_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28171..28962
DNA (792bp) protein (264aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Diaminopimelate epimerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDQ9_9FIRM
diaminopimelate epimerase
L2_039_362G1_scaffold_180_26
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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29144..30406
DNA (1263bp) protein (421aa)
Na+/H+ antiporter n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SFE3_9FIRM
Na+/H+ antiporter {ECO:0000313|EMBL:CCZ45486.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
Na+/H+ antiporter
L2_039_362G1_scaffold_180_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30580..31725
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46785.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
integrase family protein
L2_039_362G1_scaffold_180_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31813..32232
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative Holliday junction resolvase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD88_9FIRM
putative Holliday junction resolvase
L2_039_362G1_scaffold_180_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32271..32558
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46783.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_362G1_scaffold_180_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32672..33418
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46782.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
fesA; 4Fe-4S ferredoxin
Displaying 30 items

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