ggKbase home page

L3_069_000M1_scaffold_284_28

Organism: dasL3_069_000M1_concoct_2_fa

near complete RP 50 / 55 BSCG 50 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(31437..32786)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6U1_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 98.9
  • Coverage: 449.0
  • Bit_score: 853
  • Evalue 6.20e-245
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 449.0
  • Bit_score: 862
  • Evalue 2.50e-247
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 78.2
  • Coverage: 449.0
  • Bit_score: 679
  • Evalue 6.00e-193

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Collinsella sp. 4_8_47FAA → Collinsella → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1350
GTGCCAAAAAAGACTGAGAGCACGGGTACTGGGCTGGAATCCTACGTTGCAAAGCTCATGGGCAACGGCTCAAACAGGACTTCGGTAACCGAGGACGAGATTCAGGTCGCCCTGAAGGATATCGATGTTTCTGACGAGCAGCTCACCGCGGTGTATTCCGCGCTGCGCAACAGCGGCATCCAGATTATCTCCGCGAGCGGTAACGACGACGCCCCCATGGACGTCGACGATGACGATAACGATACCGATACCGACGATTTCGATGACGACGACGAGCACGATTCCGGCTCGCTCGACGATCACGAGCTCAAGATGGCCCGCCAGGCCGACGCCGAGATGGGTTCTTCCAAGAGCAAGAAGAAGCGCACCGTGCGCACGTCCCGTTCGCGTTCGCGCGTGCGCGGCATCGATGCCTCCACGGTGATGCTGACCGGCGACCCGGTCCGTATGTACCTCAAGGAGATCGGCAAGGTCGACCTGCTGACCGCCTCCGAAGAGGTCGATCTGGCCATGAAGATCGAGGCCGGTCTTGAGGCCACCGAGAAGCTCGAGGCTGCCGATGCTGGTGAGCTCGAACTCACGCGTGCCGAGATGCGTCGTCTTACGCGCATTGAGAACGTGGGCCTCGAAGCCAAGCAGGCGCTCATCAGCGCAAACCTGCGTCTGGTCGTCTCCATCGCCAAGCGCTATGTCGGTCGCGGCATGCTGTTCCTGGACCTGATCCAGGAGGGCAACCTCGGTCTGATTCGCGCCGTCGAGAAGTTCGACTACCAGAAGGGCTTTAAGTTCTCCACGTACGCCACGTGGTGGATCCGTCAGGCCATCACGCGCGCTATCGCCGACCAGGCCCGTACCATCCGTATTCCCGTGCACATGGTCGAGACCATCAACAAGCTCGTCCGTGTGCAGCGCCAGCTCCTTCAGGACCTGGGTCGCGACCCGACCCCCGAGGAGATCGGTGCCGAGATGGACATGAGCGCCGACCGCGTCCGCGAGATCCAGAAGATCTCGCAGGAGCCCGTGTCGCTCGAGACCCCCATCGGCGAGGAAGAGGATTCTCAGCTGGGCGACTTCATCGAGGACTCCCAGGCTATCGTTCCGCCCGATGCGGCCAGCTTCTCCATGCTGCAGGAGCAGCTCACCCAGGTGCTCGATTCGCTTGCCGATCGTGAGCGCAAGGTTATCGAGCTGCGCTTTGGCCTTGTCGACGGACATCCCCGTACGCTCGAGGAAGTCGGCCGCGAGTTTGGTGTCACGCGCGAGCGCATCCGCCAGATTGAGTCCAAGACCCTGGCCAAGCTCCGCCATCCCAGCCGTAGCAGCAAGCTGAAGGACTATATTGAGTCTTAA
PROTEIN sequence
Length: 450
VPKKTESTGTGLESYVAKLMGNGSNRTSVTEDEIQVALKDIDVSDEQLTAVYSALRNSGIQIISASGNDDAPMDVDDDDNDTDTDDFDDDDEHDSGSLDDHELKMARQADAEMGSSKSKKKRTVRTSRSRSRVRGIDASTVMLTGDPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEATEKLEAADAGELELTRAEMRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQDLGRDPTPEEIGAEMDMSADRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSQAIVPPDAASFSMLQEQLTQVLDSLADRERKVIELRFGLVDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYIES*