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L3_069_242G1_scaffold_358

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_069_242G1_scaffold_358_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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73..1881
DNA (1809bp) protein (603aa)
pepF; oligoendopeptidase F (EC:3.4.24.-)
Oligoendopeptidase F n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAE8_9FIRM
Oligoendopeptidase F {ECO:0000313|EMBL:EGJ47326.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_358_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1961..2728)
DNA (768bp) protein (256aa)
DNA repair protein RecO n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAE7_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
recO; DNA repair protein RecO
L3_069_242G1_scaffold_358_3
unknown

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comp(2757..2915)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_069_242G1_scaffold_358_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3029..3925)
DNA (897bp) protein (299aa)
GTPase Era n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAE5_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
era; GTP-binding protein Era
L3_069_242G1_scaffold_358_5
unknown

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comp(4091..4363)
DNA (273bp) protein (91aa)

This feature has no annotations

L3_069_242G1_scaffold_358_6
unknown

Not on your lists

comp(4402..4662)
DNA (261bp) protein (87aa)

This feature has no annotations

L3_069_242G1_scaffold_358_7
unknown

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comp(4850..5011)
DNA (162bp) protein (54aa)

This feature has no annotations

L3_069_242G1_scaffold_358_8
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5008..5514)
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Endoribonuclease YbeY n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVU5_9FIRM
hypothetical protein
L3_069_242G1_scaffold_358_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5560..6546)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47321.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
PhoH-like protein
L3_069_242G1_scaffold_358_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6561..7790)
DNA (1230bp) protein (410aa)
Sporulation protein YqfD n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAE2_9FIRM
Sporulation protein YqfD {ECO:0000313|EMBL:EGJ47320.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
yqfD; putative stage IV sporulation protein
L3_069_242G1_scaffold_358_11
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(7801..8082)
DNA (282bp) protein (94aa)
Sporulation protein YqfC n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YD11_9FIRM
Sporulation protein YqfC {ECO:0000313|EMBL:ESL13487.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
sporulation protein YqfC
L3_069_242G1_scaffold_358_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8186..12364)
DNA (4179bp) protein (1393aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
polC; PolC-type DNA polymerase I (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC74_9FIRM
L3_069_242G1_scaffold_358_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12428..13465)
DNA (1038bp) protein (346aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.4.3)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC75_9FIRM
L3_069_242G1_scaffold_358_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13508..14572)
DNA (1065bp) protein (355aa)
putative M50B family peptidase (EC:3.4.24.-)
RIP metalloprotease RseP n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC76_9FIRM
RIP metalloprotease RseP {ECO:0000313|EMBL:EGJ48110.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_069_242G1_scaffold_358_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14607..15749)
DNA (1143bp) protein (381aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC77_9FIRM
L3_069_242G1_scaffold_358_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15807..16625)
DNA (819bp) protein (273aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Phosphatidate cytidylyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC78_9FIRM
cdsA; phosphatidate cytidylyltransferase
L3_069_242G1_scaffold_358_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16627..17367)
DNA (741bp) protein (247aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC79_9FIRM
L3_069_242G1_scaffold_358_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17523..18077)
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC80_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
frr; ribosome recycling factor
L3_069_242G1_scaffold_358_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18120..18836)
DNA (717bp) protein (239aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC81_9FIRM
L3_069_242G1_scaffold_358_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19080..19874
DNA (795bp) protein (265aa)
ZIP family zinc transporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC82_9FIRM
ZIP family zinc transporter {ECO:0000313|EMBL:EGJ48116.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
zinc/iron permease
L3_069_242G1_scaffold_358_21
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

20009..20779
DNA (771bp) protein (257aa)
RNA polymerase sigma-G factor n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDF2_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
putative RNA polymerase sigma factor
L3_069_242G1_scaffold_358_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20789..22810)
DNA (2022bp) protein (674aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RVL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60560.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative transporter
L3_069_242G1_scaffold_358_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22843..24303)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48121.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative transporter
L3_069_242G1_scaffold_358_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24329..25807)
DNA (1479bp) protein (493aa)
Multicomponent Na+:H+ antiporter subunit D n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC88_9FIRM
Multicomponent Na+:H+ antiporter subunit D {ECO:0000313|EMBL:EGJ48122.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative transporter
L3_069_242G1_scaffold_358_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25839..27332)
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48123.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative transporter
L3_069_242G1_scaffold_358_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27367..27744)
DNA (378bp) protein (126aa)
Multicomponent Na+:H+ antiporter subunit C n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC90_9FIRM
Multicomponent Na+:H+ antiporter subunit C {ECO:0000313|EMBL:EGJ48124.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sodium/proton antiporter
L3_069_242G1_scaffold_358_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27748..28758)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48125.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Multisubunit Na+/H+ antiporter, MnhB subunit
L3_069_242G1_scaffold_358_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28748..29005)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48126.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_069_242G1_scaffold_358_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29002..29331)
DNA (330bp) protein (110aa)
Monovalent cation/proton antiporter, MnhG/PhaG subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC93_9FIRM
Monovalent cation/proton antiporter, MnhG/PhaG subunit {ECO:0000313|EMBL:EGJ48127.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Multisubunit Na+/H+ antiporter, MnhG subunit
L3_069_242G1_scaffold_358_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29328..29630)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48128.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative transporter
Displaying items 1-30 of 49 in total

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