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L3_079_000G1_public_UNK

In projects: L3_079_000G1_public

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 291.61 Longest contig: 665.58 Kbp Bin length: 204.78 Mbp GC content: 47.74 %
Contigs count: 36549 Features count: 216013 rRNAs count: 28 tRNAs count: 2907

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 20 / 38 MC: 18
Displaying items 35851-35900 of 36549 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L3_079_000G1_scaffold_25028
Species: Streptococcus parasanguinis (100%)
2 1377 bp 43.21 6.32 100.65
L3_079_000G1_scaffold_22118
Species: Clostridium sp. MSTE9 (50%)
2 1529 bp 57.82 2.94 100.65
L3_079_000G1_scaffold_25166
Species: Butyricicoccus pullicaecorum (100%)
2 1371 bp 57.26 3.72 100.66
L3_079_000G1_scaffold_15041
Species: Clostridium sp. CAG:58 (100%)
3 2128 bp 46.90 6.34 100.66
L3_079_000G1_scaffold_10106
Species: Shigella flexneri (100%)
3 3034 bp 47.86 6.28 100.66
L3_079_000G1_scaffold_25304
Species: Eubacterium ramulus (50%)
2 1365 bp 46.81 910.55 100.66
L3_079_000G1_scaffold_25373
Species: Lachnospiraceae bacterium 3_1_46FAA (50%)
2 1362 bp 37.37 3.52 100.66
L3_079_000G1_scaffold_15172
Species: [Clostridium] bolteae (100%)
2 2113 bp 39.61 5.11 100.66
L3_079_000G1_scaffold_34695
Species: Erysipelatoclostridium ramosum (50%)
2 1055 bp 32.23 3.27 100.66
L3_079_000G1_scaffold_34722
Species: Coprococcus catus (50%)
2 1055 bp 48.25 5.12 100.66
L3_079_000G1_scaffold_29717
Species: [Clostridium] symbiosum (50%)
2 1201 bp 46.63 2.37 100.67
L3_079_000G1_scaffold_11490
Species: Erysipelatoclostridium ramosum (50%)
4 2700 bp 31.37 5.44 100.67
L3_079_000G1_scaffold_34951
Species: Clostridium sp. D5 (100%)
2 1049 bp 46.23 6.01 100.67
L3_079_000G1_scaffold_20227
Species: Eubacterium brachy (50%)
2 1648 bp 46.54 3.19 100.67
L3_079_000G1_scaffold_29808
Species: Coprobacillus sp. 8_2_54BFAA (100%)
2 1198 bp 32.05 5.88 100.67
L3_079_000G1_scaffold_25755
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1347 bp 55.53 4.01 100.67
L3_079_000G1_scaffold_12286
Species: Anaerotruncus colihominis (100%)
4 2542 bp 50.31 4.13 100.67
L3_079_000G1_scaffold_22879
Species: Firmicutes bacterium CAG:102 (50%)
2 1487 bp 56.15 4.24 100.67
L3_079_000G1_scaffold_30056
Species: Hungatella hathewayi (100%)
2 1189 bp 52.82 3.03 100.67
L3_079_000G1_scaffold_35327
Species: Streptococcus sp. oral taxon 071 (50%)
2 1040 bp 47.21 7.79 100.67
L3_079_000G1_scaffold_35484
Species: Shigella flexneri (100%)
2 1037 bp 55.16 4.92 100.68
L3_079_000G1_scaffold_23053
Species: Lachnospiraceae bacterium A4 (50%)
2 1478 bp 36.74 3.86 100.68
L3_079_000G1_scaffold_20550
Species: Coprobacillus sp. CAG:183 (66.67%)
3 1624 bp 31.90 6.00 100.68
L3_079_000G1_scaffold_26415
Species: Roseburia sp. CAG:18 (100%)
2 1320 bp 47.65 4.09 100.68
L3_079_000G1_scaffold_9956
Species: Bilophila wadsworthia (50%)
8 3078 bp 61.63 16.23 100.68
L3_079_000G1_scaffold_30618
Species: Streptococcus mitis (100%)
2 1171 bp 40.48 3.84 100.68
L3_079_000G1_scaffold_30835
Species: Streptococcus australis (50%)
2 1165 bp 41.63 3.86 100.69
L3_079_000G1_scaffold_20939
Species: Eubacterium sp. CAG:76 (100%)
2 1600 bp 37.94 5.25 100.69
L3_079_000G1_scaffold_36349
Species: [Clostridium] saccharolyticum (50%)
2 1016 bp 37.89 7.23 100.69
L3_079_000G1_scaffold_26787
Species: Hungatella hathewayi (100%)
3 1305 bp 45.75 2.76 100.69
L3_079_000G1_scaffold_31022
Species: Haemophilus haemolyticus (100%)
2 1159 bp 41.33 3.62 100.69
L3_079_000G1_scaffold_13654
Species: Firmicutes bacterium CAG:145 (50%)
2 2312 bp 34.47 6.81 100.69
L3_079_000G1_scaffold_26965
Species: Roseburia sp. CAG:18 (66.67%)
3 1299 bp 43.65 4.85 100.69
L3_079_000G1_scaffold_36605
Species: Ruminococcus torques CAG:61 (50%)
2 1010 bp 46.24 4.16 100.69
L3_079_000G1_scaffold_10674
Species: Hafnia alvei (83.33%)
6 2884 bp 55.41 5.88 100.69
L3_079_000G1_scaffold_19130
Species: Lactobacillus rhamnosus (100%)
2 1728 bp 47.57 23.96 100.69
L3_079_000G1_scaffold_14796
Species: Roseburia inulinivorans (100%)
2 2157 bp 36.07 20.58 100.70
L3_079_000G1_scaffold_11443
Species: Clostridium sp. ATCC 29733 (100%)
2 2711 bp 59.98 76.63 100.70
L3_079_000G1_scaffold_27306 4 1284 bp 36.06 3.50 100.70
L3_079_000G1_scaffold_31612
Species: Escherichia coli (100%)
3 1141 bp 56.70 11.31 100.70
L3_079_000G1_scaffold_31643
Species: Flavonifractor plautii (50%)
2 1141 bp 64.42 268.19 100.70
L3_079_000G1_scaffold_16183
Species: Lactobacillus rhamnosus (50%)
4 1996 bp 42.59 5.49 100.70
L3_079_000G1_scaffold_27554
Species: Ethanoligenens harbinense (100%)
2 1275 bp 44.78 5.41 100.71
L3_079_000G1_scaffold_27632
Species: Corynebacterium imitans (50%)
2 1272 bp 59.98 3.07 100.71
L3_079_000G1_scaffold_32013
Species: Megasphaera micronuciformis (100%)
2 1129 bp 48.89 2.66 100.71
L3_079_000G1_scaffold_32254
Species: Streptococcus parasanguinis (50%)
2 1123 bp 45.06 5.61 100.71
L3_079_000G1_scaffold_24580
Species: [Clostridium] symbiosum (66.67%)
3 1397 bp 52.54 3.22 100.72
L3_079_000G1_scaffold_32471
Species: Eubacterium sp. CAG:76 (100%)
2 1117 bp 36.26 4.83 100.72
L3_079_000G1_scaffold_28244
Species: Clostridium sp. CAG:299 (50%)
2 1251 bp 41.89 3.12 100.72
L3_079_000G1_scaffold_16671
Order: Clostridiales (66.67%)
3 1945 bp 52.90 6.25 100.72
Displaying items 35851-35900 of 36549 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.