ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 172.80 Longest contig: 705.81 Kbp Bin length: 42.37 Mbp GC content: 50.70 %

Contigs count: 4747 Features count: 42317 rRNAs count: 14 tRNAs count: 662

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17

Displaying items 4551-4600 of 4747 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_079_062G1_scaffold_3894 Species: Clostridium leptum CAG:27 (100%)	1	1224 bp	40.36	4.41	100.00
L3_079_062G1_scaffold_1348 Species: Veillonella sp. 6_1_27 (100%)	2	3854 bp	32.77	4.90	100.03
L3_079_062G1_scaffold_2749 Species: Eggerthella lenta (50%)	2	1760 bp	64.38	6.73	100.06
L3_079_062G1_scaffold_2798 Species: Escherichia coli (50%)	2	1727 bp	56.92	4.26	100.06
L3_079_062G1_scaffold_3167 Species: Thermosinus carboxydivorans (50%)	2	1508 bp	40.32	5.47	100.07
L3_079_062G1_scaffold_1691 Species: Klebsiella pneumoniae (100%)	2	2989 bp	53.33	8.53	100.07
L3_079_062G1_scaffold_3600 Species: Citrobacter amalonaticus (100%)	2	1328 bp	58.06	3.50	100.08
L3_079_062G1_scaffold_3664 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1304 bp	62.81	28.76	100.08
L3_079_062G1_scaffold_3685 Species: Eggerthella lenta (50%)	2	1298 bp	63.56	23.69	100.08
L3_079_062G1_scaffold_3872 Species: Veillonella sp. 3_1_44 (100%)	2	1232 bp	43.83	4.38	100.08
L3_079_062G1_scaffold_3889 Species: Peptoclostridium difficile (50%)	2	1226 bp	70.31	4.53	100.08
L3_079_062G1_scaffold_3971 Species: Parabacteroides distasonis (66.67%)	3	1202 bp	44.01	3.49	100.08
L3_079_062G1_scaffold_4094 Species: Escherichia coli (50%)	2	1166 bp	52.40	3.09	100.09
L3_079_062G1_scaffold_4172 Species: Veillonella parvula (100%)	2	1145 bp	34.32	4.06	100.09
L3_079_062G1_scaffold_4321 Species: Citrobacter amalonaticus (50%)	2	1106 bp	61.39	3.25	100.09
L3_079_062G1_scaffold_4330 Species: Citrobacter amalonaticus (50%)	2	1103 bp	54.76	4.35	100.09
L3_079_062G1_scaffold_4452 Species: Parabacteroides sp. D13 (50%)	2	1070 bp	45.51	2.38	100.09
L3_079_062G1_scaffold_2318 Species: Peptoclostridium difficile (50%)	2	2119 bp	37.61	3.82	100.09
L3_079_062G1_scaffold_8175 Species: Slackia exigua (100%)	2	1007 bp	68.12	626.51	100.10
L3_079_062G1_scaffold_1113 Species: Eggerthella sp. HGA1 (80%)	5	4999 bp	63.35	6.18	100.10
L3_079_062G1_scaffold_2518 Species: Eggerthella sp. HGA1 (100%)	3	1942 bp	58.14	3.86	100.10
L3_079_062G1_scaffold_1920 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	3	2625 bp	58.40	15.14	100.11
L3_079_062G1_scaffold_2770 Species: Citrobacter sp. MGH 55 (50%)	2	1750 bp	59.43	3.77	100.11
L3_079_062G1_scaffold_2944 Species: Citrobacter sp. MGH 55 (50%)	2	1633 bp	56.52	4.23	100.12
L3_079_062G1_scaffold_2957 Species: Citrobacter sp. MGH 55 (100%)	2	1624 bp	55.48	2.96	100.12
L3_079_062G1_scaffold_1584 Species: Eggerthella lenta (100%)	3	3221 bp	49.58	3.73	100.12
L3_079_062G1_scaffold_3088 Species: Citrobacter farmeri (50%)	2	1555 bp	59.68	2.89	100.13
L3_079_062G1_scaffold_3470 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1381 bp	56.63	13.03	100.15
L3_079_062G1_scaffold_3519 Species: Peptoclostridium difficile (50%)	2	1360 bp	71.99	5.07	100.15
L3_079_062G1_scaffold_3537 Species: Veillonella dispar (50%)	2	1354 bp	38.70	5.54	100.15
L3_079_062G1_scaffold_3621 Species: Citrobacter amalonaticus (50%)	2	1321 bp	59.65	4.20	100.15
L3_079_062G1_scaffold_3697 Species: Bacteroides fragilis (100%)	2	1294 bp	46.06	2.55	100.16
L3_079_062G1_scaffold_3716 Species: Clostridium sp. MSTE9 (50%)	2	1285 bp	42.65	3.15	100.16
L3_079_062G1_scaffold_3736 Species: Citrobacter sp. MGH 55 (50%)	2	1279 bp	51.29	4.46	100.16
L3_079_062G1_scaffold_1238 Species: Veillonella sp. 6_1_27 (83.33%)	6	4295 bp	38.14	4.71	100.16
L3_079_062G1_scaffold_2096 Species: Eggerthella lenta (100%)	2	2369 bp	63.99	7.28	100.17
L3_079_062G1_scaffold_4100 Species: Citrobacter sp. MGH 55 (50%)	2	1165 bp	53.05	4.51	100.17
L3_079_062G1_scaffold_2130 Species: Clostridium sp. MSTE9 (100%)	3	2327 bp	40.40	4.45	100.17
L3_079_062G1_scaffold_2797 Order: Clostridiales (66.67%)	3	1728 bp	37.62	4.43	100.17
L3_079_062G1_scaffold_2152 Species: Citrobacter sp. MGH 55 (50%)	2	2300 bp	55.57	3.65	100.17
L3_079_062G1_scaffold_4406 Species: Clostridium sp. CAG:557 (50%)	2	1084 bp	41.79	5.26	100.18
L3_079_062G1_scaffold_4424 Species: Lactobacillus rhamnosus (100%)	2	1078 bp	47.96	3.06	100.19
L3_079_062G1_scaffold_4457 Species: Parabacteroides distasonis (50%)	2	1069 bp	53.70	4.21	100.19
L3_079_062G1_scaffold_2989 Species: Veillonella dispar (66.67%)	3	1602 bp	39.83	3.84	100.19
L3_079_062G1_scaffold_4478 Species: Firmicutes bacterium CAG:102 (50%)	2	1063 bp	41.58	4.23	100.19
L3_079_062G1_scaffold_3036 Species: Eggerthella lenta (100%)	2	1581 bp	54.46	5.22	100.19
L3_079_062G1_scaffold_4587 Species: Clostridium sp. ATCC 29733 (50%)	2	1039 bp	40.13	3.90	100.19
L3_079_062G1_scaffold_3098 Species: Citrobacter amalonaticus (66.67%)	3	1551 bp	53.64	3.87	100.19
L3_079_062G1_scaffold_4631 Species: Eggerthella lenta (50%)	2	1030 bp	67.96	5.83	100.19
L3_079_062G1_scaffold_4633 Species: Clostridium sp. MSTE9 (100%)	2	1030 bp	42.14	4.37	100.19

Displaying items 4551-4600 of 4747 in total

L3_079_062G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_079_062G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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