ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 138.80 Longest contig: 690.54 Kbp Bin length: 45.67 Mbp GC content: 50.05 %

Contigs count: 5440 Features count: 46203 rRNAs count: 13 tRNAs count: 791

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 16

Displaying items 101-150 of 5440 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_079_062G2_scaffold_5533 Species: Bacteroides sp. 1_1_30 (50%)	2	1041 bp	44.38	3.17	100.29
L3_079_062G2_scaffold_5503 Order: Bacteroidales (66.67%)	3	1047 bp	42.88	3.44	100.29
L3_079_062G2_scaffold_5456 Species: Streptococcus sp. HSISS3 (50%)	2	1053 bp	42.83	4.13	100.29
L3_079_062G2_scaffold_3980 Species: Bacteroides stercoris (50%)	2	1409 bp	53.02	3.94	100.28
L3_079_062G2_scaffold_5420 Species: Lachnospiraceae bacterium 7_1_58FAA (66.67%)	3	1059 bp	59.30	37.82	100.28
L3_079_062G2_scaffold_3929 Species: Bilophila sp. 4_1_30 (100%)	2	1430 bp	68.11	3.04	100.28
L3_079_062G2_scaffold_3930 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1430 bp	59.58	56.33	100.28
L3_079_062G2_scaffold_2651 Genus: Streptococcus (80%)	5	2148 bp	42.97	3.21	100.28
L3_079_062G2_scaffold_3873 Genus: Parabacteroides (66.67%)	3	1448 bp	44.27	3.63	100.28
L3_079_062G2_scaffold_5249 Species: Parabacteroides distasonis (100%)	2	1095 bp	37.81	2.47	100.27
L3_079_062G2_scaffold_5177 Species: Bilophila sp. 4_1_30 (100%)	2	1107 bp	65.22	3.39	100.27
L3_079_062G2_scaffold_5090 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1122 bp	62.66	34.76	100.27
L3_079_062G2_scaffold_5092 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1122 bp	63.01	75.13	100.27
L3_079_062G2_scaffold_5057 Species: Streptococcus sp. C150 (50%)	2	1128 bp	41.05	3.46	100.27
L3_079_062G2_scaffold_5004 Species: Paracoccus denitrificans (50%)	2	1137 bp	67.72	3.17	100.26
L3_079_062G2_scaffold_3513 Species: Citrobacter sp. MGH 55 (100%)	2	1592 bp	55.65	8.29	100.25
L3_079_062G2_scaffold_4588 Species: Clostridium sp. MSTE9 (100%)	2	1230 bp	39.35	2.68	100.24
L3_079_062G2_scaffold_4591 Species: Blautia hydrogenotrophica CAG:147 (50%)	2	1230 bp	52.03	3.66	100.24
L3_079_062G2_scaffold_4556 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1239 bp	66.02	65.01	100.24
L3_079_062G2_scaffold_4538 Species: Clostridium sp. MSTE9 (50%)	2	1245 bp	35.42	2.53	100.24
L3_079_062G2_scaffold_3299 Genus: Citrobacter (100%)	3	1697 bp	59.05	6.81	100.24
L3_079_062G2_scaffold_4378 Species: Clostridium sp. MSTE9 (50%)	2	1287 bp	41.57	3.26	100.23
L3_079_062G2_scaffold_4332 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1299 bp	64.59	54.39	100.23
L3_079_062G2_scaffold_3224 Species: Bacteroides fragilis (50%)	2	1733 bp	56.09	84.74	100.23
L3_079_062G2_scaffold_4225 Species: Parabacteroides sp. 20_3 (50%)	2	1332 bp	49.02	2.48	100.23
L3_079_062G2_scaffold_2560 Genus: Bacteroides (66.67%)	3	2239 bp	35.73	3.42	100.22
L3_079_062G2_scaffold_4048 Species: Parabacteroides sp. D13 (50%)	2	1386 bp	46.25	4.33	100.22
L3_079_062G2_scaffold_2986 Species: Parabacteroides distasonis (100%)	2	1865 bp	50.51	3.22	100.21
L3_079_062G2_scaffold_4001 Species: Bacteroides uniformis (50%)	2	1401 bp	39.69	4.60	100.21
L3_079_062G2_scaffold_3898 Species: Citrobacter amalonaticus (100%)	3	1440 bp	55.35	5.10	100.21
L3_079_062G2_scaffold_1658 Species: Streptococcus salivarius (50%)	2	3853 bp	45.21	5.29	100.21
L3_079_062G2_scaffold_3639 Species: Parabacteroides sp. CAG:2 (100%)	2	1533 bp	51.99	3.91	100.20
L3_079_062G2_scaffold_3549 Species: Citrobacter sp. MGH 55 (50%)	2	1575 bp	56.44	4.95	100.19
L3_079_062G2_scaffold_5360 Species: Bacteroides fragilis (50%)	2	1069 bp	46.96	5.05	100.19
L3_079_062G2_scaffold_5336 Species: Streptococcus parasanguinis (100%)	2	1075 bp	39.44	3.35	100.19
L3_079_062G2_scaffold_5306 Species: Bacteroides stercoris (50%)	2	1081 bp	43.57	6.80	100.18
L3_079_062G2_scaffold_5289 Species: Streptococcus parasanguinis (100%)	2	1084 bp	31.00	2.77	100.18
L3_079_062G2_scaffold_5290 Order: Clostridiales (66.67%)	3	1084 bp	37.64	2.77	100.18
L3_079_062G2_scaffold_3414 Species: Citrobacter amalonaticus (50%)	2	1647 bp	55.49	6.10	100.18
L3_079_062G2_scaffold_5176 Species: Citrobacter farmeri (50%)	2	1108 bp	58.66	4.33	100.18
L3_079_062G2_scaffold_4869 Species: Streptococcus sp. HSISS3 (50%)	2	1165 bp	38.11	3.48	100.17
L3_079_062G2_scaffold_3176 Species: Citrobacter farmeri (50%)	2	1752 bp	54.05	5.14	100.17
L3_079_062G2_scaffold_4831 Genus: Streptococcus (100%)	3	1174 bp	40.80	2.30	100.17
L3_079_062G2_scaffold_4725 Species: Parabacteroides distasonis (50%)	2	1198 bp	44.24	4.26	100.17
L3_079_062G2_scaffold_4444 Species: Streptococcus sp. C150 (50%)	2	1267 bp	43.57	4.14	100.16
L3_079_062G2_scaffold_4413 Species: Bacteroides vulgatus (50%)	2	1276 bp	63.40	3.88	100.16
L3_079_062G2_scaffold_4310 Genus: Streptococcus (100%)	3	1306 bp	46.78	3.45	100.15
L3_079_062G2_scaffold_4065 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1381 bp	56.63	46.38	100.15
L3_079_062G2_scaffold_1159 Species: Citrobacter amalonaticus (100%)	4	6247 bp	57.55	7.30	100.13
L3_079_062G2_scaffold_3316 Species: Parabacteroides sp. D13 (50%)	2	1690 bp	58.88	4.97	100.12

Displaying items 101-150 of 5440 in total

L3_079_062G2_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_079_062G2_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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