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L3_098_000G1_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 225 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_18_1
unknown

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2..181
DNA (180bp) protein (60aa)

This feature has no annotations

L3_098_000G1_scaffold_18_2
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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360..1196
DNA (837bp) protein (279aa)
membrane protein n=1 Tax=Alistipes senegalensis RepID=UPI00031E1F36
ABC 3 transport family protein {ECO:0000313|EMBL:CDE63797.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
Mn2+/Zn2+ ABC transporter permease
L3_098_000G1_scaffold_18_3
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1193..2656
DNA (1464bp) protein (488aa)
Putative permease n=1 Tax=Alistipes sp. CAG:29 RepID=R6Y7F9_9BACT
Putative permease {ECO:0000313|EMBL:CDD24571.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
Predicted permeases
L3_098_000G1_scaffold_18_4
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2668..3894
DNA (1227bp) protein (409aa)
Riboflavin biosynthesis protein RibBA n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT76_9BACT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase
L3_098_000G1_scaffold_18_5
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4111..5100
DNA (990bp) protein (330aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002DCC41F
L3_098_000G1_scaffold_18_6

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comp(5327..5704)
DNA (378bp) protein (126aa)
Thioredoxin {ECO:0000313|EMBL:EKC50373.1}; EC=1.8.4.2 {ECO:0000313|EMBL:EKC50373.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Thioredoxin n=2 Tax=root RepID=B0MT47_9BACT
thioredoxin
L3_098_000G1_scaffold_18_7
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5754..6437)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Tannerella RepID=R7DEJ2_9PORP
peroxiredoxin
Peroxiredoxin {ECO:0000313|EMBL:AHF12026.1}; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
L3_098_000G1_scaffold_18_8
Tannerella sp. CAG:51, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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6574..7497
DNA (924bp) protein (308aa)
Uncharacterized protein n=3 Tax=Porphyromonadaceae RepID=R7DCQ0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD88349.1}; TaxID=1262979 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella; environmental samples.;" source="Tannerella sp. CAG:51.;"
LysR family transcriptional regulator
L3_098_000G1_scaffold_18_9
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7783..8328)
DNA (546bp) protein (182aa)
2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JJE4_9BACT
2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit {ECO:0000313|EMBL:CDE63786.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
2-oxoacid:ferredoxin oxidoreductase subunit gamma
L3_098_000G1_scaffold_18_10
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8344..9105)
DNA (762bp) protein (254aa)
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein n=1 Tax=Alistipes sp. HGB5 RepID=E4MD01_9BACT
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein {ECO:0000313|EMBL:EFR57173.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
2-oxoacid:ferredoxin oxidoreductase subunit beta
L3_098_000G1_scaffold_18_11
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(9110..10207)
DNA (1098bp) protein (366aa)
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein n=3 Tax=root RepID=B0MT44_9BACT
Pyruvate flavodoxin/ferredoxin oxidoreductase thiamine diP-binding domain protein {ECO:0000313|EMBL:CDE63784.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
2-oxoacid:ferredoxin oxidoreductase subunit alpha
L3_098_000G1_scaffold_18_12
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(10211..10438)
DNA (228bp) protein (76aa)
4Fe-4S binding domain. (EC:1.2.7.3)
4Fe-4S binding domain {ECO:0000313|EMBL:CBK63288.1}; EC=1.2.7.3 {ECO:0000313|EMBL:CBK63288.1};; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
ferredoxin n=1 Tax=Alistipes sp. JC136 RepID=UPI0002885F3F
L3_098_000G1_scaffold_18_13
Prevotella sp. oral taxon 473, Alloprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10690..11148
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 473 str. F0040 RepID=L1M9R2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKX87947.1}; TaxID=1035197 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella.;" source="Prevotella sp. oral taxon 473 str. F0040.;"
hypothetical protein
L3_098_000G1_scaffold_18_14
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(11239..12483)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XSJ2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD24600.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L3_098_000G1_scaffold_18_15
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(12508..13431)
DNA (924bp) protein (308aa)
4-phosphoerythronate dehydrogenase n=3 Tax=root RepID=B0MT62_9BACT
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CDE63778.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
phosphoglycerate dehydrogenase-like oxidoreductase
L3_098_000G1_scaffold_18_16
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13524..14594)
DNA (1071bp) protein (357aa)
phosphoserine aminotransferase apoenzyme (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBK63290.1};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
MFS transporter n=1 Tax=Alistipes senegalensis RepID=UPI0002DEB84C
L3_098_000G1_scaffold_18_17
Alistipes sp. CAG:268, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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14798..15679
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI000363A31A
TIGR00255 family protein {ECO:0000313|EMBL:CDC97205.1}; TaxID=1262693 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:268.;"
conserved hypothetical protein TIGR00255
L3_098_000G1_scaffold_18_18
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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15681..16253
DNA (573bp) protein (191aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT59_9BACT
L3_098_000G1_scaffold_18_19
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16250..17062
DNA (813bp) protein (271aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
nicotinate/nicotinamide nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT58_9BACT
L3_098_000G1_scaffold_18_20
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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17068..18060
DNA (993bp) protein (331aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
D-alanine--D-alanine ligase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT
ATP-grasp enzyme, D-alanine-D-alanine ligase
L3_098_000G1_scaffold_18_21
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18057..18632
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6Z2D0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD24607.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
Protein of unknown function (DUF3109).
L3_098_000G1_scaffold_18_22
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18658..19707
DNA (1050bp) protein (350aa)
Peptidase, M23 family n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT55_9BACT
Peptidase, M23 family {ECO:0000313|EMBL:EDS04505.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
Membrane proteins related to metalloendopeptidases
L3_098_000G1_scaffold_18_23
Alistipes finegoldii CAG:68, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(19861..20643)
DNA (783bp) protein (261aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1263035 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes finegoldii CAG:68.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=2 Tax=Alistipes RepID=E4MD18_9BACT
L3_098_000G1_scaffold_18_24
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(20655..21323)
DNA (669bp) protein (223aa)
Pyridoxal phosphate enzyme, YggS family n=3 Tax=root RepID=B0MT53_9BACT
Pyridoxal phosphate enzyme YggS family {ECO:0000313|EMBL:CDE63736.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L3_098_000G1_scaffold_18_25
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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21406..23073
DNA (1668bp) protein (556aa)
Peptidase C69 family n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JLF6_9BACT
Peptidase C69 family {ECO:0000313|EMBL:CDE63727.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
Dipeptidase
L3_098_000G1_scaffold_18_26
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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23089..24465
DNA (1377bp) protein (459aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
dihydrolipoyl dehydrogenase n=1 Tax=Alistipes sp. JC136 RepID=UPI00028976FA
dihydrolipoamide dehydrogenase
L3_098_000G1_scaffold_18_27
unknown

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comp(24705..24881)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_098_000G1_scaffold_18_28
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(24869..25678)
DNA (810bp) protein (270aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
tRNA pseudouridine synthase A n=2 Tax=Alistipes RepID=I3YRA3_ALIFI
pseudouridylate synthase I
L3_098_000G1_scaffold_18_29
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25990..27399)
DNA (1410bp) protein (470aa)
Putative aspartate ammonia-lyase n=1 Tax=Alistipes putredinis CAG:67 RepID=R7JLE3_9BACT
Putative aspartate ammonia-lyase {ECO:0000313|EMBL:CDE63722.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
aspartate ammonia-lyase
L3_098_000G1_scaffold_18_30
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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27590..28303
DNA (714bp) protein (238aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=3 Tax=root RepID=B0MSX7_9BACT
Displaying items 1-30 of 225 in total

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