ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 90.42 Longest contig: 314.05 Kbp Bin length: 99.59 Mbp GC content: 45.63 %

Contigs count: 19418 Features count: 106672 rRNAs count: 11 tRNAs count: 1400

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 16

Displaying items 651-700 of 19418 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_098_000M1_scaffold_18384 Species: Lachnospiraceae bacterium 6_1_37FAA (50%)	2	1057 bp	35.95	3.12	100.19
L3_098_000M1_scaffold_11372 Species: Eubacterium sp. 3_1_31 (100%)	2	1587 bp	35.85	4.06	100.19
L3_098_000M1_scaffold_18327 Species: Firmicutes bacterium CAG:114 (100%)	2	1060 bp	67.17	2.55	100.19
L3_098_000M1_scaffold_11225 Species: Firmicutes bacterium CAG:466 (50%)	2	1605 bp	52.65	3.83	100.19
L3_098_000M1_scaffold_18007 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (50%)	2	1078 bp	37.94	2.92	100.19
L3_098_000M1_scaffold_17957 Species: Eubacterium hallii CAG:12 (50%)	2	1081 bp	37.00	3.33	100.18
L3_098_000M1_scaffold_17819 Species: Firmicutes bacterium ASF500 (100%)	2	1087 bp	55.20	5.66	100.18
L3_098_000M1_scaffold_17833 Species: Clostridium sp. KLE 1755 (50%)	2	1087 bp	46.83	4.00	100.18
L3_098_000M1_scaffold_17712 Species: Firmicutes bacterium ASF500 (100%)	2	1093 bp	55.81	4.12	100.18
L3_098_000M1_scaffold_17550 Species: Bacteroides uniformis (50%)	2	1102 bp	48.82	9.12	100.18
L3_098_000M1_scaffold_17557 Species: Bacteroides sp. 4_1_36 (50%)	2	1102 bp	50.09	92.83	100.18
L3_098_000M1_scaffold_7841 Species: Eubacterium sp. 3_1_31 (100%)	3	2204 bp	38.52	4.76	100.18
L3_098_000M1_scaffold_10858 Species: Clostridium sp. CAG:505 (100%)	2	1653 bp	48.46	5.63	100.18
L3_098_000M1_scaffold_17356 Species: Blautia sp. CAG:257 (100%)	2	1111 bp	50.05	3.24	100.18
L3_098_000M1_scaffold_17357 Species: Firmicutes bacterium CAG:110 (50%)	2	1111 bp	45.72	2.97	100.18
L3_098_000M1_scaffold_16946 Species: [Ruminococcus] gnavus (50%)	2	1132 bp	35.95	5.04	100.18
L3_098_000M1_scaffold_16950 Species: Roseburia sp. CAG:18 (100%)	2	1132 bp	44.26	4.11	100.18
L3_098_000M1_scaffold_16955 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1132 bp	52.39	3.18	100.18
L3_098_000M1_scaffold_10475 Species: Erysipelotrichaceae bacterium 5_2_54FAA (50%)	2	1704 bp	39.20	4.49	100.18
L3_098_000M1_scaffold_16832 Species: Blautia hansenii (50%)	2	1138 bp	28.82	3.95	100.18
L3_098_000M1_scaffold_16843 Species: Firmicutes bacterium CAG:424 (50%)	2	1138 bp	45.69	3.82	100.18
L3_098_000M1_scaffold_4050 Genus: Lachnoclostridium (66.67%)	3	3995 bp	58.55	5.33	100.18
L3_098_000M1_scaffold_16665 Species: Blautia sp. CAG:257 (100%)	2	1147 bp	49.35	7.06	100.17
L3_098_000M1_scaffold_10362 Species: Clostridium sp. CAG:413 (50%)	2	1722 bp	39.31	5.31	100.17
L3_098_000M1_scaffold_10209 Species: Eubacterium sp. 3_1_31 (100%)	2	1743 bp	40.79	4.48	100.17
L3_098_000M1_scaffold_10013 Species: Eubacterium sp. 3_1_31 (100%)	2	1773 bp	38.30	4.65	100.17
L3_098_000M1_scaffold_16014 Species: Firmicutes bacterium CAG:424 (100%)	2	1183 bp	42.18	2.79	100.17
L3_098_000M1_scaffold_16021 Species: Eubacterium eligens CAG:72 (100%)	2	1183 bp	38.63	3.17	100.17
L3_098_000M1_scaffold_15826 Species: Flavonifractor plautii (50%)	2	1195 bp	65.02	21.97	100.17
L3_098_000M1_scaffold_9852 Species: Eubacterium hallii CAG:12 (50%)	2	1794 bp	41.81	4.68	100.17
L3_098_000M1_scaffold_15739 Species: Subdoligranulum sp. 4_3_54A2FAA (50%)	4	1201 bp	52.04	7.24	100.17
L3_098_000M1_scaffold_7092 Species: Clostridium sp. ATCC BAA-442 (50%)	4	2408 bp	53.65	4.36	100.17
L3_098_000M1_scaffold_15561 Species: [Clostridium] symbiosum (66.67%)	3	1213 bp	39.32	3.59	100.16
L3_098_000M1_scaffold_15566 Species: human gut metagenome (50%)	2	1213 bp	60.92	3.71	100.16
L3_098_000M1_scaffold_15507 Species: Subdoligranulum variabile (50%)	2	1216 bp	65.13	3.33	100.16
L3_098_000M1_scaffold_15433 Species: Flavonifractor plautii (100%)	2	1222 bp	63.99	29.46	100.16
L3_098_000M1_scaffold_15436 Species: Hungatella hathewayi (100%)	2	1222 bp	46.81	2.82	100.16
L3_098_000M1_scaffold_9582 Species: Clostridium sp. CAG:58 (100%)	2	1839 bp	58.62	3.34	100.16
L3_098_000M1_scaffold_9254 Species: Blautia hansenii (50%)	2	1896 bp	45.57	3.96	100.16
L3_098_000M1_scaffold_14863 Genus: Subdoligranulum (66.67%)	3	1264 bp	53.48	14.72	100.16
L3_098_000M1_scaffold_14787 Species: Firmicutes bacterium ASF500 (100%)	2	1270 bp	58.90	3.90	100.16
L3_098_000M1_scaffold_14488 Species: Hungatella hathewayi (50%)	2	1291 bp	46.48	3.02	100.16
L3_098_000M1_scaffold_6512 Species: Eubacterium limosum (66.67%)	3	2594 bp	41.71	6.25	100.15
L3_098_000M1_scaffold_3540 Phylum: Firmicutes (80%)	5	4586 bp	34.61	5.89	100.15
L3_098_000M1_scaffold_14206 Species: Eubacterium sp. CAG:146 (50%)	2	1312 bp	40.40	4.00	100.15
L3_098_000M1_scaffold_14211 Species: Ruminococcus lactaris (50%)	2	1312 bp	51.30	26.18	100.15
L3_098_000M1_scaffold_14130 Species: Streptococcus equinus (50%)	2	1318 bp	30.35	3.87	100.15
L3_098_000M1_scaffold_8777 Order: Clostridiales (66.67%)	3	1992 bp	38.81	4.74	100.15
L3_098_000M1_scaffold_13996 Species: Roseburia sp. CAG:18 (100%)	2	1330 bp	49.85	3.95	100.15
L3_098_000M1_scaffold_8694 Species: Eubacterium sp. 3_1_31 (100%)	2	2007 bp	33.63	4.48	100.15

Displaying items 651-700 of 19418 in total

L3_098_000M1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_098_000M1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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