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L3_098_030G1_public_UNK

In projects: L3_098_030G1_public

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 123.77 Longest contig: 522.68 Kbp Bin length: 64.59 Mbp GC content: 43.50 %
Contigs count: 17788 Features count: 71265 rRNAs count: 10 tRNAs count: 865

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 15
Displaying items 451-500 of 17788 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L3_098_030G1_scaffold_4161
Species: Pseudomonas sp. GM48 (66.67%)
3 2816 bp 42.05 4.47 100.35
L3_098_030G1_scaffold_3635
Species: Enterobacter cloacae (75%)
4 3121 bp 62.22 6.87 100.35
L3_098_030G1_scaffold_2628
Species: Ruminococcus sp. 5_1_39BFAA (92.31%)
13 3985 bp 39.47 6.66 100.35
L3_098_030G1_scaffold_3198
Species: Escherichia coli (100%)
3 3423 bp 54.92 4.56 100.35
L3_098_030G1_scaffold_14663
Species: Bacteroides sp. 3_1_40A (50%)
2 1145 bp 51.88 31.44 100.35
L3_098_030G1_scaffold_14604
Species: Enterobacter cloacae (50%)
2 1148 bp 64.02 7.32 100.35
L3_098_030G1_scaffold_5432
Species: Escherichia coli (100%)
2 2299 bp 53.63 4.89 100.35
L3_098_030G1_scaffold_14501
Species: Klebsiella pneumoniae (50%)
2 1154 bp 54.07 3.12 100.35
L3_098_030G1_scaffold_10403
Species: Faecalibacterium prausnitzii (100%)
3 1444 bp 63.16 3.95 100.35
L3_098_030G1_scaffold_5372
Species: Ruminococcus sp. 5_1_39BFAA (100%)
3 2317 bp 45.27 5.76 100.35
L3_098_030G1_scaffold_4584
Species: Bacteroides uniformis (50%)
4 2613 bp 49.37 10.79 100.34
L3_098_030G1_scaffold_3957
Species: Bifidobacterium longum (100%)
4 2915 bp 60.58 3.24 100.34
L3_098_030G1_scaffold_14196
Species: Faecalibacterium prausnitzii (50%)
2 1169 bp 54.75 4.75 100.34
L3_098_030G1_scaffold_14007
Species: Escherichia coli (100%)
2 1181 bp 53.77 4.57 100.34
L3_098_030G1_scaffold_13791
Species: Corynebacterium striatum (100%)
2 1193 bp 62.70 3.27 100.34
L3_098_030G1_scaffold_13738
Species: Klebsiella pneumoniae (50%)
2 1196 bp 48.66 4.26 100.33
L3_098_030G1_scaffold_13696
Species: Streptococcus oralis (50%)
2 1199 bp 38.45 3.38 100.33
L3_098_030G1_scaffold_13636
Species: Bacteroides sp. 3_1_33FAA (50%)
2 1202 bp 45.01 4.62 100.33
L3_098_030G1_scaffold_23914
Species: Staphylococcus sp. DORA_6_22 (50%)
2 1205 bp 33.86 252.57 100.33
L3_098_030G1_scaffold_9808
Species: Bacteroides massiliensis (50%)
2 1507 bp 38.49 6.67 100.33
L3_098_030G1_scaffold_13313
Species: Eubacterium rectale (100%)
3 1220 bp 43.36 5.66 100.33
L3_098_030G1_scaffold_7413
Species: Lelliottia amnigena (100%)
2 1833 bp 57.12 5.16 100.33
L3_098_030G1_scaffold_9533
Species: Finegoldia magna (100%)
6 1534 bp 33.96 3.81 100.33
L3_098_030G1_scaffold_7292
Species: Faecalibacterium prausnitzii (100%)
3 1854 bp 63.43 3.96 100.32
L3_098_030G1_scaffold_13019
Species: Bacteroides fragilis (100%)
2 1238 bp 54.04 3.88 100.32
L3_098_030G1_scaffold_4210
Species: Enterobacter sp. 35683 (50%)
4 2793 bp 63.34 6.50 100.32
L3_098_030G1_scaffold_4202
Species: Eubacterium rectale CAG:36 (50%)
2 2796 bp 46.42 4.88 100.32
L3_098_030G1_scaffold_12858
Species: Corynebacterium minutissimum (50%)
2 1247 bp 61.99 3.13 100.32
L3_098_030G1_scaffold_12819
Species: Bifidobacterium pseudocatenulatum (50%)
2 1250 bp 64.72 7.20 100.32
L3_098_030G1_scaffold_4875
Genus: Enterobacter (66.67%)
3 2500 bp 53.04 6.42 100.32
L3_098_030G1_scaffold_9220
Species: Bacteroides uniformis (100%)
2 1570 bp 41.59 4.68 100.32
L3_098_030G1_scaffold_3500
Genus: Bifidobacterium (50%)
4 3206 bp 67.72 3.79 100.31
L3_098_030G1_scaffold_12033
Species: Shigella dysenteriae (50%)
2 1307 bp 52.18 4.59 100.31
L3_098_030G1_scaffold_11911
Genus: Enterobacter (100%)
3 1316 bp 61.25 3.99 100.30
L3_098_030G1_scaffold_11916
Genus: Alistipes (66.67%)
3 1316 bp 59.50 4.79 100.30
L3_098_030G1_scaffold_3842
Species: Citrobacter freundii (66.67%)
3 2985 bp 59.50 6.68 100.30
L3_098_030G1_scaffold_11683
Order: Enterobacteriales (100%)
3 1337 bp 57.44 6.39 100.30
L3_098_030G1_scaffold_11644
Species: Shigella dysenteriae (50%)
2 1340 bp 53.43 5.15 100.30
L3_098_030G1_scaffold_17419
Species: Escherichia coli (100%)
2 1014 bp 54.34 2.96 100.30
L3_098_030G1_scaffold_6431
Species: Bacteroides vulgatus (100%)
3 2028 bp 44.33 37.50 100.30
L3_098_030G1_scaffold_8168
Species: Escherichia coli (100%)
3 1708 bp 29.68 2.81 100.29
L3_098_030G1_scaffold_17036
Species: Faecalibacterium prausnitzii (100%)
2 1029 bp 59.09 3.94 100.29
L3_098_030G1_scaffold_17043
Species: Bacteroides ovatus (100%)
2 1029 bp 39.46 5.10 100.29
L3_098_030G1_scaffold_16837
Species: Streptococcus anginosus (100%)
2 1038 bp 42.68 7.80 100.29
L3_098_030G1_scaffold_28157
Species: Bacteroides vulgatus (50%)
2 1044 bp 50.77 32.47 100.29
L3_098_030G1_scaffold_10934
Species: Alistipes putredinis CAG:67 (100%)
2 1397 bp 53.04 4.19 100.29
L3_098_030G1_scaffold_10910
Species: Clostridium sp. M62/1 (50%)
2 1400 bp 49.93 12.43 100.29
L3_098_030G1_scaffold_16488
Species: Alistipes putredinis CAG:67 (100%)
2 1053 bp 58.50 3.85 100.29
L3_098_030G1_scaffold_16362
Species: Bacteroides sp. 4_3_47FAA (50%)
2 1059 bp 45.80 6.23 100.28
L3_098_030G1_scaffold_16302
Species: Bifidobacterium bifidum (100%)
2 1062 bp 64.03 3.39 100.28
Displaying items 451-500 of 17788 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.