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L3_101_000M1_public_UNK

In projects: L3_101_000M1_public

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 73.08 Longest contig: 476.23 Kbp Bin length: 125.35 Mbp GC content: 46.96 %
Contigs count: 29891 Features count: 138452 rRNAs count: 18 tRNAs count: 1955

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 16
Displaying items 601-650 of 29891 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L3_101_000M1_scaffold_20760
Species: [Ruminococcus] gnavus (50%)
2 1345 bp 38.88 3.79 100.59
L3_101_000M1_scaffold_24536
Species: Ruminococcus sp. SR1/5 (50%)
2 1181 bp 32.26 4.06 100.59
L3_101_000M1_scaffold_24396
Species: Lachnospiraceae bacterium 1_4_56FAA (50%)
2 1187 bp 46.67 3.16 100.59
L3_101_000M1_scaffold_9454
Species: Roseburia intestinalis (100%)
3 2559 bp 41.54 7.50 100.59
L3_101_000M1_scaffold_20381
Species: Anaerotruncus colihominis (100%)
2 1366 bp 59.88 3.95 100.59
L3_101_000M1_scaffold_20317
Species: [Clostridium] asparagiforme (100%)
3 1369 bp 58.07 3.83 100.58
L3_101_000M1_scaffold_20332
Species: Roseburia intestinalis (50%)
2 1369 bp 56.46 21.48 100.58
L3_101_000M1_scaffold_29179
Species: Eubacterium sp. CAG:76 (100%)
2 1029 bp 41.50 4.08 100.58
L3_101_000M1_scaffold_20206
Species: Ruminococcus bicirculans (50%)
2 1375 bp 49.24 3.71 100.58
L3_101_000M1_scaffold_6997
Species: Dorea sp. CAG:317 (100%)
4 3281 bp 42.43 5.17 100.58
L3_101_000M1_scaffold_11080
Species: Subdoligranulum sp. 4_3_54A2FAA (66.67%)
3 2249 bp 49.62 4.14 100.58
L3_101_000M1_scaffold_19821
Species: Ruminococcus sp. CAG:55 (50%)
2 1396 bp 40.69 3.55 100.57
L3_101_000M1_scaffold_13307
Species: Eubacterium sp. CAG:156 (100%)
2 1927 bp 28.80 3.50 100.57
L3_101_000M1_scaffold_14932
Phylum: Firmicutes (66.67%)
3 1754 bp 47.49 3.59 100.57
L3_101_000M1_scaffold_23327
Species: Clostridium sp. MSTE9 (100%)
2 1229 bp 50.85 4.03 100.57
L3_101_000M1_scaffold_28216
Species: Coprobacillus sp. 3_3_56FAA (100%)
2 1056 bp 34.66 2.84 100.57
L3_101_000M1_scaffold_28218
Species: Clostridium sp. 7_3_54FAA (50%)
2 1056 bp 50.28 3.41 100.57
L3_101_000M1_scaffold_23168
Species: [Clostridium] asparagiforme (100%)
2 1235 bp 58.22 2.79 100.57
L3_101_000M1_scaffold_23009
Species: Clostridium clostridioforme CAG:132 (100%)
2 1241 bp 45.29 3.38 100.56
L3_101_000M1_scaffold_10699
Species: Clostridium sp. CAG:253 (75%)
4 2312 bp 33.35 5.58 100.56
L3_101_000M1_scaffold_16679
Species: Clostridium sp. 7_3_54FAA (50%)
2 1605 bp 48.97 5.89 100.56
L3_101_000M1_scaffold_22711
Order: Clostridiales (66.67%)
3 1253 bp 49.72 4.55 100.56
L3_101_000M1_scaffold_22639
Species: Alistipes indistinctus (100%)
2 1256 bp 49.04 4.06 100.56
L3_101_000M1_scaffold_14485
Species: Pseudoflavonifractor capillosus (50%)
2 1802 bp 64.71 3.75 100.55
L3_101_000M1_scaffold_11600
Species: Firmicutes bacterium CAG:65 (66.67%)
3 2163 bp 47.99 5.20 100.55
L3_101_000M1_scaffold_14386
Species: unidentified phage (66.67%)
3 1811 bp 61.02 4.64 100.55
L3_101_000M1_scaffold_22358
Species: Firmicutes bacterium CAG:424 (100%)
2 1268 bp 43.69 4.73 100.55
L3_101_000M1_scaffold_18748
Species: Flavonifractor plautii (66.67%)
3 1459 bp 67.79 4.01 100.55
L3_101_000M1_scaffold_16181
Species: [Eubacterium] siraeum (50%)
2 1647 bp 47.72 4.55 100.55
L3_101_000M1_scaffold_16107
Species: Flavonifractor plautii (50%)
2 1653 bp 65.82 5.08 100.54
L3_101_000M1_scaffold_21944
Species: Ruminococcus sp. CAG:57 (100%)
2 1286 bp 47.20 3.50 100.54
L3_101_000M1_scaffold_16025
Order: Clostridiales (66.67%)
3 1659 bp 66.06 3.53 100.54
L3_101_000M1_scaffold_18463
Species: Ruminococcaceae bacterium 585-1 (100%)
2 1477 bp 59.58 4.67 100.54
L3_101_000M1_scaffold_13984
Species: Faecalibacterium prausnitzii (100%)
2 1850 bp 37.51 3.73 100.54
L3_101_000M1_scaffold_21369
Species: Eubacterium rectale (66.67%)
3 1313 bp 38.77 69.69 100.53
L3_101_000M1_scaffold_11040
Species: [Clostridium] cellulosi (66.67%)
3 2256 bp 44.46 3.72 100.53
L3_101_000M1_scaffold_11021
Species: Ruminococcus bicirculans (100%)
2 2259 bp 43.38 2.72 100.53
L3_101_000M1_scaffold_9086
Species: Firmicutes bacterium CAG:65 (100%)
2 2638 bp 51.06 5.80 100.53
L3_101_000M1_scaffold_17807
Species: Clostridium sp. KLE 1755 (100%)
2 1519 bp 56.55 2.76 100.53
L3_101_000M1_scaffold_25430
Species: [Clostridium] scindens (50%)
2 1146 bp 48.52 2.62 100.52
L3_101_000M1_scaffold_20891
Species: [Clostridium] bolteae (100%)
2 1337 bp 51.91 3.03 100.52
L3_101_000M1_scaffold_15289
Species: Firmicutes bacterium CAG:646 (50%)
2 1722 bp 62.20 3.92 100.52
L3_101_000M1_scaffold_20840
Species: Ruminococcus sp. CAG:9 (100%)
2 1340 bp 45.22 28.21 100.52
L3_101_000M1_scaffold_10723
Species: Clostridium sp. ASF356 (50%)
2 2307 bp 37.02 5.07 100.52
L3_101_000M1_scaffold_25023
Species: Bacteroides sp. 2_2_4 (50%)
2 1161 bp 37.98 38.63 100.52
L3_101_000M1_scaffold_15035
Species: Ruminococcus sp. CAG:57 (66.67%)
3 1743 bp 44.29 3.61 100.52
L3_101_000M1_scaffold_11764
Species: [Ruminococcus] gnavus (50%)
2 2131 bp 41.20 6.26 100.52
L3_101_000M1_scaffold_5746
Genus: Roseburia (80%)
5 3877 bp 45.45 6.96 100.52
L3_101_000M1_scaffold_24898
Species: [Ruminococcus] gnavus (50%)
2 1167 bp 46.10 4.24 100.51
L3_101_000M1_scaffold_11712
Species: Dorea sp. CAG:317 (80%)
5 2140 bp 44.25 5.05 100.51
Displaying items 601-650 of 29891 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.