ggKbase home page

L3_105_000M1_scaffold_993_7

Organism: dasL3_105_000M1_concoct_68_fa

near complete RP 45 / 55 MC: 1 BSCG 47 / 51 MC: 2 ASCG 14 / 38
Location: 8731..10002

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Clostridium sp. CAG:413 RepID=R6NNG9_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 60.7
  • Coverage: 428.0
  • Bit_score: 550
  • Evalue 1.40e-153
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.7
  • Coverage: 428.0
  • Bit_score: 550
  • Evalue 2.00e-153
RNA polymerase ECF-type sigma factor variant similarity KEGG
DB: KEGG
  • Identity: 35.8
  • Coverage: 148.0
  • Bit_score: 83
  • Evalue 1.40e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium sp. CAG:413 → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1272
GTGGATGAATTTGTGAACCTGCTGGAAGCAGAACGAGTATCTGTGGAACGTTTTGTAAGATTTCGGATAAGCTTAAAATCCGATGCAGATGATGTGTTACAGGAAGTATTCCTTACTGCTTATCAAAAGTTTCCTCAACTAAAGAATAAGAACGCGTTCAAAGCATGGATCATTAGCATAGCGCGAAACAAGTGCAATGATTATTTCCGAAAGAAAGCAACTCAGTACGAAATTCCGATCGATGAGTTGACAGAAAAGGAACTATCAGACGGCAGGCACGGTGTTTCCGTAGTTAATACTGTAAGAGAAACGTTGAGTTTGCTCGGTGATAAGGATAAGCAGATCCTTTACCTTTACTTCTGGAAAGAGATGCCGCAGTTAGAAATCGCAAAACAACTGAACATCCCTATTGGGACTGTAAAAAGCAGACTGCATACAGCGAAACAAAACTTCAAAAATAAGTATCCATATCGCACCGATGTATCGAAAGGAGAACGCAGCATGAAAAAGTTGCCTGAATTTATTCCCGAATATAAAATCGAAGCAAGTACCGAAGCTCCCTTTGCAGTAAAATGGGAAGAACTTATGGGATGGTTCTTGGTACCGAAGCTCGGAGAAAAGATGTCCTGGGGTATGTACGATATCCCGTCCCGAAAGTGCAGCCATGTGTATGATATGCAAGTTACCGGCAAAGCAAAGGTTCACGGTATTGAGGGCGTGGAACTGACTGCCCGAGAAGCGTCCTACTCAGATAAGAACGATGTGATCAATCGTACCTTTGTGGCCCAACTGACAGATACACACTGCCGCTATCTGGCAACACTCAGAAATGACGGCGACGTTCGCAATTATATTACATTTCTCGATGGCGATGAATTTCTGCCTAACTGGGGATTTGGCGAAGATAATTGCGGTAATGAAACTAACCTGGCAGTTAAGGGTGATATCCAGAGAACAGGTACAGTCGTTACAAGCGCCAACAAAGATTTTCTGTTGGACATTGTAGGACGTTACACCGTTACGATTGGCGGAAAGAGCTATGACACTGTCTGTGTTATGGACATTGAAACCTATAATTGCGGTGTAGTATCCGAGCAGTTCCTGGATAAGAACGGAAAGACGATTCTTTGGCGCAGGTTCAATCGTGATGATTGGGCTATTGACCGCTATAAGAAGCTGTGGAGTGAGCAGCTGCCGGAGAACGACAGACTTACCGTAAACGGTACTACCTATGTTCACTGGTATGATTGCATCACAGATTATATTTTGTAA
PROTEIN sequence
Length: 424
VDEFVNLLEAERVSVERFVRFRISLKSDADDVLQEVFLTAYQKFPQLKNKNAFKAWIISIARNKCNDYFRKKATQYEIPIDELTEKELSDGRHGVSVVNTVRETLSLLGDKDKQILYLYFWKEMPQLEIAKQLNIPIGTVKSRLHTAKQNFKNKYPYRTDVSKGERSMKKLPEFIPEYKIEASTEAPFAVKWEELMGWFLVPKLGEKMSWGMYDIPSRKCSHVYDMQVTGKAKVHGIEGVELTAREASYSDKNDVINRTFVAQLTDTHCRYLATLRNDGDVRNYITFLDGDEFLPNWGFGEDNCGNETNLAVKGDIQRTGTVVTSANKDFLLDIVGRYTVTIGGKSYDTVCVMDIETYNCGVVSEQFLDKNGKTILWRRFNRDDWAIDRYKKLWSEQLPENDRLTVNGTTYVHWYDCITDYIL*