ggKbase home page

L3_114_000M1_scaffold_4240_3

Organism: dasL3_114_000M1_concoct_0_fa

near complete RP 48 / 55 BSCG 48 / 51 MC: 1 ASCG 12 / 38
Location: comp(3149..6613)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 1146.0
  • Bit_score: 2050
  • Evalue 0.0
transcription-repair coupling factor (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 67.1
  • Coverage: 1163.0
  • Bit_score: 1557
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN58_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 1146.0
  • Bit_score: 2050
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Subdoligranulum variabile → Subdoligranulum → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3465
ATGTTCAACGCACTTTTCACCAAAACAGACGAATACGCAAGACTGGCGCAGGCGCTCGGGGGTCCGGGGGCTTGCGCCTTATTTGGCATACCGGGGTCGGGCCGGGCGATGGTCTATGCCGCGCTGGCGAAGGCCCTCGACAAGCCGCTCTGCATCGTGACGCCCGGCGAGGCCGAGGCGACCCGGTTTGCGGGCGACCTGAACGCGCTGGGCGTGGCAGCGGCAGTGTTCCCTGCCCGTGACTATGTGCTGCGCCCCATCGAGGGCACGGGCCGCGAGTACGAATACCGCCGTCTGGCCGTGCTGGGCGACCTCGTCGGCGGGCGGCTGCAGGCCGTCTGCGTGCCCGACGAGGGCCTGACCCAATACACGACGCCGCGGGCGGATTTCTGCGCGAACACCCGCAGCCTGCGCCCCGGCGACACACTGCCCCGCGCCGTGCTGACCGCGCTTTTGTACGGCGCAGGCTATACGCGGCGCGACCAGGTGGACGGCCCGGGTCAGTTTTCGATCCGCGGCGACATTGCGGACATCTACGCGCCCGACATGAAGCAGCCCGCCCGCATGGAGTTCTGGGGCGACGAGATCGACACGATGCACACCTTCGATCTGGCGACCCAGCGCCGCGACGAGCCGATTGAAAAAATCTACGTCTCCCCTGCGCGGGAGATACTGTTCGGTCAGCCCGCCGACGCAGCGGAGAAGATCCGCTCCTATATCAAAAAGGCCCGCGGCAGGCGGCGCACCGCCTTAGAGACCTGCACCGCTGCGGACCTGGCACAGCTAGACGGCGGCGCGATGCCCGTCAACATGGACAAATATCTCACGCTGCGCTATCCCGAGCCTGCGACGATTTTAGACTACTTTGACGATCCGCTGCTGATCCTGGAGGAGCCGGCCTCCCTGCGGGAGGCCGAGCGCGCCACCGCGTTCCGCCGGGGCGAGGAGCTTTCCGCCCTGCTGGAGGACGGCGTGCTGGCGGCAGGGCTGGATAAGCTCTACGCCGAGAGCGGCTGGCTCTGGGCGCAGTGCAGCGCGCACCGCACGCTCTGCGCCGAGAATTTTGCCCGCAGTATGCCCGATGTGCCGCTGAAAGCCATCGTCAACGCACCCGCCCACACGCTGCCCGCCTGGGGCGGCGAGGTCGCGGCGCTGCTGGAGGACATCCAGCCGCTTTGCAGCGGCGGCACGGCGGTCACGGTCATGGCCGGCACGCCCCGTGCGGCGGCAGGTCTGGCCGCCGACCTGCGCACCAAAGGGCTGAACGTCACGACGGACGCGGCGGCGGAGCCGAGCGCCGGGTTGGTGCAGATCCTGCCGGGGCAGCTTTCCGCCGGGTGCAGCCTGCCGTTTGCGAAGTACGCCGTGTTTACGGCCCGCGCCTTCGGCGTGAGCGGCGCACAGAAGAAGAAAAAGCGCAATAAGGACGCGCTGAACAGCCTGAGCGAAATCTCGGTGGGTGATCTGGTCGTCCACCAGAACCACGGCATCGGGCGGTACGCGGGCATCCAGCGGATGGCCGTGCAGGGCGTCACAAAGGACTATCTGCGCATCGAGTACGACAAAAAGGACGTGCTGTACGTGCCCGTCACCCAGCTGGACCTTTTGTCCCGCTACACTGCGCCGGGCGACAGTGACAACGTGAAGCTGAGCCGCCTGGGCGGCAGCGACTGGGCCAAGACCCGCAAGAAGGTCAAGGCTGCGACGGAGCAGATGGCGAAGGAGCTGATCGAGCTGTACGCCCGCCGCAAGCAGGCGCACGGCTACGCCTTCCCCGCCGACGACACCTGGCAGGGTGATTTTGAACAGCGCTTTGCCTATGAGGAAACGCCCGACCAGCTGACCTGCGCGGCGGACATCAAGCACGATATGGAGGAGCCGTGGCCGATGGACCGGCTGCTCTGCGGTGACGTCGGCGTCGGCAAGACCGAGGTCGCACTGCGCGCCGCGTTCAAATGCGTGATGGGCGGCAAGCAGTGCGCAATCCTGGCCCCCACGACGATTCTGGCGTGGCAGCACTTCAACACCGCGCTGACCCGCATGGAGTCCTTCCCCATCCGCATCGGGCTTTTGTCCCGCTACCGCACCGCCAAGGAGCAGAAGGAGACGCTGCGCGGGCTGAAGGACGGCACTGTGGACATTGTAGTCGGCACGCACCGGCTGCTGTCCGGCGATGTGAAATTCAAGGACCTGGGCCTTGTCATCATCGACGAGGAGCAGCGGTTCGGCGTCAAGCACAAGGAAAAGCTCAAAGAGAGCTTCATCGGCGTCGATATGCTGACGCTGTCGGCCACGCCGATCCCCCGCACGCTGAACATGGCGCTGTCGGGCATCCGCGATATGAGCACAATTGAGCAGCCGCCGTTTGAGCGCCAGCCGATTGAAACCTATGTGCTCGAGTACGACGAGGGCATCGTGTCCGAGGCCATCCGCAAGGAGCTGGCCCGCGGCGGGCAGGTATACTACCTGCACAACCGCGTGGACAACATTGAGGAATGTGCCGCACGGGTGGGCAAGCTCGTGCCCGGGGCGCGTATCGGCATTGCCCACGGCAAGATGACCGAGGAGCAAATTTCGTCGGTGTGGCAGCAATTGTTGGACAACGAGATCGACATCCTTGTCTGCACCACCTTAATTGAGACCGGCGTGGACGTGCGCAACTGCAACACGCTGATCATTGAAAATGCGGACCGCATGGGATTGAGCCAGCTGTACCAGATCCGCGGGCGCGTGGGACGCAGCTCCCGCAAGGCGTATGCGTATTTCACCTTCACACGCGATAAGGTGCTGACCGAGATCGCGGCCAAGCGGCTTTCGGCCATCCGGGAGTTCACGTCGTTCGGGTCGGGCTTCCGCATTGCGATGCGCGACTTGCAGATCCGCGGTGCGGGCAGCCTTTTGGGCCACAGCCAGCACGGCCACATGGAGGCCGTCGGCTACGATTTGTACGTGAAGATGCTGGGTCAGGCCATTGCCGCAGCCCGCGGCGAGGCCCCCGCCCCTGACAAGAGCGACTGCCTGGTGGACATCACCGTGGACGCATTCCTGCCGGAGGAATATATCCCGGACGCTGCCGGGCGCATCGAGGCATACAAGCGCATTGCGGCCATCGAGACGACGAGCGACGCCGAGGACGTGCTCGACGAGCTGATCGACCGCTACGGCAGCCCGCCCAAGAGCGTGCAGGGGCTGGTGGACGTCTCCCTCGTGCGCGTGACCGCAGCCCGCGTCGGCATTGCGGAGATCGTCCAGCGCGGCGACCAGCTGATTTTGTATAGTGACATCGTCGGGCCAAAGCAGCTGGGCGAGGTCATGGAGAAGTTCCCGCATCGGGTGCTGTACAATGCACTGGGCCGACCCTATTTCAGCCTGCGCGTGCAGAAGGGCGAAAGCCCGCTGGTACTGCTGCGGGATGTGGTGACCCTGCTGCCGGGCGCACAGAATCAGCCACAGACAAATCCATAA
PROTEIN sequence
Length: 1155
MFNALFTKTDEYARLAQALGGPGACALFGIPGSGRAMVYAALAKALDKPLCIVTPGEAEATRFAGDLNALGVAAAVFPARDYVLRPIEGTGREYEYRRLAVLGDLVGGRLQAVCVPDEGLTQYTTPRADFCANTRSLRPGDTLPRAVLTALLYGAGYTRRDQVDGPGQFSIRGDIADIYAPDMKQPARMEFWGDEIDTMHTFDLATQRRDEPIEKIYVSPAREILFGQPADAAEKIRSYIKKARGRRRTALETCTAADLAQLDGGAMPVNMDKYLTLRYPEPATILDYFDDPLLILEEPASLREAERATAFRRGEELSALLEDGVLAAGLDKLYAESGWLWAQCSAHRTLCAENFARSMPDVPLKAIVNAPAHTLPAWGGEVAALLEDIQPLCSGGTAVTVMAGTPRAAAGLAADLRTKGLNVTTDAAAEPSAGLVQILPGQLSAGCSLPFAKYAVFTARAFGVSGAQKKKKRNKDALNSLSEISVGDLVVHQNHGIGRYAGIQRMAVQGVTKDYLRIEYDKKDVLYVPVTQLDLLSRYTAPGDSDNVKLSRLGGSDWAKTRKKVKAATEQMAKELIELYARRKQAHGYAFPADDTWQGDFEQRFAYEETPDQLTCAADIKHDMEEPWPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCAILAPTTILAWQHFNTALTRMESFPIRIGLLSRYRTAKEQKETLRGLKDGTVDIVVGTHRLLSGDVKFKDLGLVIIDEEQRFGVKHKEKLKESFIGVDMLTLSATPIPRTLNMALSGIRDMSTIEQPPFERQPIETYVLEYDEGIVSEAIRKELARGGQVYYLHNRVDNIEECAARVGKLVPGARIGIAHGKMTEEQISSVWQQLLDNEIDILVCTTLIETGVDVRNCNTLIIENADRMGLSQLYQIRGRVGRSSRKAYAYFTFTRDKVLTEIAAKRLSAIREFTSFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYDLYVKMLGQAIAAARGEAPAPDKSDCLVDITVDAFLPEEYIPDAAGRIEAYKRIAAIETTSDAEDVLDELIDRYGSPPKSVQGLVDVSLVRVTAARVGIAEIVQRGDQLILYSDIVGPKQLGEVMEKFPHRVLYNALGRPYFSLRVQKGESPLVLLRDVVTLLPGAQNQPQTNP*