ggKbase home page

dasL3_123_000G1_concoct_72_fa

L3_123_000G1_public_Collinsella_60_246
In projects: L3_123_000G1_public

Consensus taxonomy: Collinsella  →  Coriobacteriales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Displaying items 1-50 of 459 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
L3_123_000G1_scaffold_27521
Species: Collinsella aerofaciens (50%)
2 1037 bp 60.17 118.18 85.92
L3_123_000G1_scaffold_22308
Species: Collinsella sp. CAG:166 (100%)
1 1304 bp 49.85 142.75 89.03
L3_123_000G1_scaffold_24683
Species: Collinsella sp. 4_8_47FAA (100%)
1 1166 bp 54.72 144.60 69.21
L3_123_000G1_scaffold_27308
Genus: Collinsella (66.67%)
3 1046 bp 53.82 150.29 75.43
L3_123_000G1_scaffold_23286
Species: Collinsella sp. CAG:166 (100%)
1 1244 bp 61.90 151.09 66.08
L3_123_000G1_scaffold_27999 2 1018 bp 54.81 151.18 54.22
L3_123_000G1_scaffold_2712
Class: Coriobacteriia (56.25%)
16 14439 bp 49.19 152.30 83.63
L3_123_000G1_scaffold_19405
Species: Collinsella sp. CAG:166 (100%)
1 1531 bp 53.56 152.84 57.41
L3_123_000G1_scaffold_14519
Species: Collinsella sp. 4_8_47FAA (50%)
2 2176 bp 52.16 153.79 77.48
L3_123_000G1_scaffold_22621
Genus: Collinsella (66.67%)
3 1285 bp 53.77 154.09 84.28
L3_123_000G1_scaffold_15563
Species: Collinsella aerofaciens (50%)
2 2005 bp 57.96 154.34 72.42
L3_123_000G1_scaffold_1616
Class: Coriobacteriia (65%)
20 23047 bp 47.26 158.41 90.39
L3_123_000G1_scaffold_20904
Species: Collinsella sp. CAG:166 (50%)
2 1404 bp 53.70 159.94 66.03
L3_123_000G1_scaffold_21771
Species: Collinsella sp. CAG:166 (100%)
1 1342 bp 55.81 159.95 35.54
L3_123_000G1_scaffold_27549
Species: Collinsella sp. 4_8_47FAA (100%)
1 1036 bp 61.29 160.28 99.90
L3_123_000G1_scaffold_2307
Order: Clostridiales (56.25%)
16 16810 bp 54.31 165.29 90.89
L3_123_000G1_scaffold_16495
Species: Collinsella sp. 4_8_47FAA (100%)
2 1871 bp 57.78 166.27 72.31
L3_123_000G1_scaffold_27011
Species: Collinsella aerofaciens (66.67%)
3 1059 bp 53.26 167.71 48.73
L3_123_000G1_scaffold_24208
Species: Collinsella aerofaciens (50%)
2 1192 bp 56.29 168.50 62.92
L3_123_000G1_scaffold_14876
Genus: Collinsella (100%)
3 2111 bp 54.24 168.55 97.92
L3_123_000G1_scaffold_19539
Species: Collinsella sp. CAG:166 (50%)
2 1519 bp 60.76 169.16 96.97
L3_123_000G1_scaffold_23298
Species: Collinsella sp. CAG:166 (50%)
2 1244 bp 60.77 169.17 89.47
L3_123_000G1_scaffold_22898 2 1268 bp 53.23 171.06 82.33
L3_123_000G1_scaffold_15748
Species: Collinsella aerofaciens (50%)
2 1974 bp 61.09 171.35 86.02
L3_123_000G1_scaffold_2006
Genus: Collinsella (100%)
21 18938 bp 56.44 171.94 88.96
L3_123_000G1_scaffold_20233
Species: Collinsella sp. CAG:166 (100%)
1 1454 bp 64.37 172.08 98.01
L3_123_000G1_scaffold_2750
Order: Coriobacteriales (50%)
12 14194 bp 53.70 173.69 89.19
L3_123_000G1_scaffold_1013
Domain: Bacteria (77.78%)
36 35541 bp 51.64 173.69 86.99
L3_123_000G1_scaffold_23699
Species: Collinsella aerofaciens (100%)
1 1221 bp 59.71 174.57 99.75
L3_123_000G1_scaffold_17002
Species: Collinsella aerofaciens (50%)
2 1800 bp 59.33 174.75 70.50
L3_123_000G1_scaffold_25850
Species: Collinsella sp. 4_8_47FAA (100%)
1 1110 bp 64.86 175.27 99.73
L3_123_000G1_scaffold_27917
Species: Collinsella aerofaciens (100%)
1 1021 bp 62.29 175.71 99.90
L3_123_000G1_scaffold_18138
Species: Collinsella sp. CAG:166 (50%)
2 1668 bp 59.47 175.90 78.24
L3_123_000G1_scaffold_21860
Species: Collinsella sp. CAG:166 (100%)
1 1336 bp 54.94 176.16 41.99
L3_123_000G1_scaffold_27325
Species: Collinsella aerofaciens (100%)
1 1045 bp 68.42 176.56 99.90
L3_123_000G1_scaffold_18818
Species: Collinsella sp. CAG:166 (100%)
1 1591 bp 60.03 176.68 99.94
L3_123_000G1_scaffold_12823
Species: Collinsella sp. CAG:166 (50%)
2 2537 bp 61.61 177.14 85.38
L3_123_000G1_scaffold_27206
Species: Collinsella sp. CAG:166 (50%)
2 1051 bp 59.37 177.40 89.06
L3_123_000G1_scaffold_15243
Species: Collinsella sp. 4_8_47FAA (50%)
2 2055 bp 54.50 177.59 59.56
L3_123_000G1_scaffold_11193
Species: Collinsella aerofaciens (100%)
2 2995 bp 59.73 177.60 99.07
L3_123_000G1_scaffold_28194
Species: Collinsella sp. 4_8_47FAA (100%)
1 1010 bp 52.77 177.62 42.77
L3_123_000G1_scaffold_15246
Genus: Collinsella (66.67%)
3 2055 bp 60.73 177.66 70.22
L3_123_000G1_scaffold_10518
Species: Collinsella aerofaciens (100%)
2 3245 bp 61.05 178.06 93.65
L3_123_000G1_scaffold_13788
Genus: Collinsella (100%)
3 2326 bp 58.81 179.54 73.90
L3_123_000G1_scaffold_18527
Species: Collinsella aerofaciens (100%)
2 1625 bp 58.77 179.72 80.68
L3_123_000G1_scaffold_15865
Species: Collinsella sp. 4_8_47FAA (100%)
2 1956 bp 62.12 179.83 98.47
L3_123_000G1_scaffold_22595
Species: Collinsella aerofaciens (66.67%)
3 1286 bp 55.60 179.98 78.15
L3_123_000G1_scaffold_27725
Species: Collinsella aerofaciens (100%)
1 1029 bp 60.84 180.03 81.63
L3_123_000G1_scaffold_17556
Species: Collinsella sp. 4_8_47FAA (100%)
3 1736 bp 61.64 180.50 89.86
L3_123_000G1_scaffold_20238
Species: Collinsella aerofaciens (100%)
1 1453 bp 63.52 181.07 99.93
Displaying items 1-50 of 459 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.