ggKbase home page

LAC_acetylene_scaffold_23944_13

Organism: LAC_acetylene_Spyrochaete_53_217

near complete RP 45 / 55 MC: 1 BSCG 47 / 51 ASCG 14 / 38
Location: 16329..17309

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8EXE9_SPICH similarity UNIREF
DB: UNIREF100
  • Identity: 52.6
  • Coverage: 306.0
  • Bit_score: 321
  • Evalue 6.20e-85
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 306.0
  • Bit_score: 321
  • Evalue 1.80e-85
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=744872 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema caldarium (strain ATCC 51460 / DSM 7334 / H1) (Spirochaeta; caldaria).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.6
  • Coverage: 306.0
  • Bit_score: 321
  • Evalue 8.70e-85

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Treponema caldarium → Treponema → Spirochaetales → Spirochaetia → Spirochaetes → Bacteria

Sequences

DNA sequence
Length: 981
ATGAGCGACCTGGAGAACTGCAATACAGGGAGCAGTTCTGAGCGGCCCACGCGCAAAAATGAAGATTCGATGGCTGATCTTGATCCTCTCAGCCTATATCTACGACAAATTTCGAAATATCCTCTCCTGGATGCCTCTCGAGAAAAGGAAATTGGCGCGCACCTCGCCGATCTCGGTGCGCAACTTACCCAAATAGACCTCGCAATTGCTGAAAAACCTGATAATGCGGAATTGGAAAGAGAACGCAATCGAATTGCGGCGGATATTCGCGCAACAAGAGAGCTGCTGATTACCTCGAATCTTCGCCTTGTGGTATCCATCGCAAAGGGATATCAGATGCGCGGCGTAAACCTTCTGGATCTCATCGACGAAGGGAATATCGGACTCATCGAAGCAGTAAGCCGCTTCGATTACAAGCGAGGTTATCGCTTTTCCACCTATGCGAGCTGGTGGATCAGGCAAGCGATCATAAAATGCCTTGTCGATCAGAGTAGAGTCATCCGTCTTCCCATCCATATGCTCAATACAATTCGGCGCTGTTATGCTTCAGCCAAGCAGCTTGTGCAAGAGCTCGGCCGCGATCCTAATATGCTGGAGCTCGCGGAAAAAATGGGAATACCCCAGAATAAAGTTGAGAGCGCTATGCAGCTCGCACAAGGGACTTCCAGCCTCGACGCAGGCCTCGACGAAGAACGAAATGGCAGCATCGGCGACAGCGTGAAGGACGAAAAAGCACCCGATCCCTTCAATCAGGCGTTCGCTGCAACAATTCGCGAGCTTTTGCGGTATGTCATGTGCTCTCTCTCGGAGCGCGAGCAGATCGTGCTCCAACTGCGGTATGGCCTTAATGGAGAAGGTCCCAAGACGCTCGAAGAGACTGGGCATGCGCTCGGCATCACCCGGGAGCGGGTCCGCCAGATCCAGGAACAGGCTCTTGAAAAAATCAAGCAGCGCCAGGAGCTTTCAGACTGCAGGACTTGA
PROTEIN sequence
Length: 327
MSDLENCNTGSSSERPTRKNEDSMADLDPLSLYLRQISKYPLLDASREKEIGAHLADLGAQLTQIDLAIAEKPDNAELERERNRIAADIRATRELLITSNLRLVVSIAKGYQMRGVNLLDLIDEGNIGLIEAVSRFDYKRGYRFSTYASWWIRQAIIKCLVDQSRVIRLPIHMLNTIRRCYASAKQLVQELGRDPNMLELAEKMGIPQNKVESAMQLAQGTSSLDAGLDEERNGSIGDSVKDEKAPDPFNQAFAATIRELLRYVMCSLSEREQIVLQLRYGLNGEGPKTLEETGHALGITRERVRQIQEQALEKIKQRQELSDCRT*