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anamox2_Sphingobacteriales_41_11_curated

anamox2_Sphingobacteriales_41_1
In projects: anamox2  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: anamox2_Sphingobacteriales_41_11 Manually curated genome
Original version: anamox2_Sphingobacteriales_41_11

Properties

Avg. coverage: 1.00 Longest contig: 79.96 Kbp Bin length: 2.77 Mbp GC content: 41.16 %
Contigs count: 129 Features count: 2490 rRNAs count: 0 tRNAs count: 35

Genome completeness

partial RP 39 / 55 MC: 1 BSCG 37 / 51 MC: 1 ASCG 11 / 38 MC: 1
Displaying items 51-100 of 129 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox2_curated_scaffold_3420
Order: Sphingobacteriales (81.82%)
11 10292 bp 40.34 1.00 88.85
anamox2_curated_scaffold_2523
Order: Sphingobacteriales (66.67%)
12 13286 bp 41.88 1.00 88.88
anamox2_curated_scaffold_672
Order: Sphingobacteriales (63.16%)
38 34256 bp 41.46 1.00 89.02
anamox2_curated_scaffold_7312
Phylum: Bacteroidetes (88.89%)
9 10580 bp 40.39 1.00 89.04
anamox2_curated_scaffold_2850
Order: Sphingobacteriales (75%)
12 11928 bp 41.76 1.00 89.24
anamox2_curated_scaffold_2765
Order: Sphingobacteriales (76.92%)
13 12602 bp 41.30 1.00 89.41
anamox2_curated_scaffold_2197
Order: Sphingobacteriales (86.67%)
15 16910 bp 41.43 1.00 89.54
anamox2_curated_scaffold_229
Order: Sphingobacteriales (78.95%)
57 63596 bp 41.73 1.00 89.57
anamox2_curated_scaffold_7755
Domain: Bacteria (66.67%)
6 5823 bp 39.33 1.00 89.64
anamox2_curated_scaffold_1314
Phylum: Bacteroidetes (86.67%)
30 24389 bp 40.24 1.00 89.71
anamox2_curated_scaffold_407
Order: Sphingobacteriales (77.5%)
40 46240 bp 40.93 1.00 89.91
anamox2_curated_scaffold_1163
Order: Sphingobacteriales (90.91%)
22 23402 bp 42.04 1.00 90.15
anamox2_curated_scaffold_289
Order: Sphingobacteriales (76.79%)
56 62351 bp 41.19 1.00 90.21
anamox2_curated_scaffold_5519
Domain: Bacteria (85.71%)
7 7507 bp 42.36 1.00 90.24
anamox2_curated_scaffold_2257
Order: Sphingobacteriales (50%)
14 14453 bp 41.71 1.00 90.29
anamox2_curated_scaffold_563
Order: Sphingobacteriales (50%)
32 37765 bp 41.19 1.00 90.32
anamox2_curated_scaffold_3177
Order: Sphingobacteriales (81.82%)
11 11218 bp 42.40 1.00 90.42
anamox2_curated_scaffold_420
Order: Sphingobacteriales (73.68%)
38 45694 bp 41.09 1.00 90.52
anamox2_curated_scaffold_918
Order: Sphingobacteriales (62.96%)
27 27866 bp 40.36 1.00 90.53
anamox2_curated_scaffold_4899
Order: Sphingobacteriales (66.67%)
6 7941 bp 42.95 1.00 90.56
anamox2_curated_scaffold_9482
Order: Sphingobacteriales (62.5%)
8 5820 bp 40.67 1.00 90.60
anamox2_curated_scaffold_737
Order: Sphingobacteriales (65.38%)
26 32536 bp 40.78 1.00 90.64
anamox2_curated_scaffold_1289
Order: Sphingobacteriales (57.89%)
19 23814 bp 41.00 1.00 90.85
anamox2_curated_scaffold_305
Order: Sphingobacteriales (70.73%)
41 53900 bp 41.24 1.00 90.93
anamox2_curated_scaffold_237
Order: Sphingobacteriales (56.9%)
58 61807 bp 40.51 1.00 91.13
anamox2_curated_scaffold_846
Order: Sphingobacteriales (73.33%)
30 29492 bp 41.90 1.00 91.33
anamox2_curated_scaffold_1149
Order: Sphingobacteriales (75%)
20 23532 bp 41.37 1.00 91.34
anamox2_curated_scaffold_2488
Order: Sphingobacteriales (52.94%)
17 14579 bp 41.72 1.00 91.36
anamox2_curated_scaffold_949
Phylum: Bacteroidetes (93.33%)
30 27096 bp 41.93 1.00 91.41
anamox2_curated_scaffold_9107
Phylum: Bacteroidetes (60%)
5 5370 bp 41.56 1.00 91.45
anamox2_curated_scaffold_308
Order: Sphingobacteriales (53.06%)
49 53428 bp 40.57 1.00 91.47
anamox2_curated_scaffold_387
Order: Sphingobacteriales (78.57%)
42 47220 bp 41.16 1.00 91.58
anamox2_curated_scaffold_319
Order: Sphingobacteriales (66%)
50 51986 bp 41.06 1.00 91.64
anamox2_curated_scaffold_5347
Order: Sphingobacteriales (50%)
8 7892 bp 40.31 1.00 91.65
anamox2_curated_scaffold_167
Order: Sphingobacteriales (73.24%)
71 74943 bp 40.88 1.00 91.67
anamox2_curated_scaffold_352
Order: Sphingobacteriales (60%)
45 49715 bp 40.72 1.00 91.69
anamox2_curated_scaffold_1170
Order: Sphingobacteriales (80.95%)
21 23333 bp 41.35 1.00 91.71
anamox2_curated_scaffold_1784
Order: Sphingobacteriales (89.47%)
19 17239 bp 40.03 1.00 91.85
anamox2_curated_scaffold_620
Order: Sphingobacteriales (50%)
26 35881 bp 41.21 1.00 91.86
anamox2_curated_scaffold_2810
Order: Sphingobacteriales (70%)
10 12452 bp 42.47 1.00 91.91
anamox2_curated_scaffold_2959
Domain: Bacteria (50%)
8 12094 bp 38.91 1.00 92.03
anamox2_curated_scaffold_1646
Order: Sphingobacteriales (50%)
12 18389 bp 41.81 1.00 92.04
anamox2_curated_scaffold_1337
Order: Sphingobacteriales (78.38%)
37 50310 bp 41.73 1.00 92.18
anamox2_curated_scaffold_996
Species: Niastella koreensis (76.19%)
21 26216 bp 41.45 1.00 92.25
anamox2_curated_scaffold_5063
Phylum: Bacteroidetes (75%)
8 7756 bp 38.94 1.00 92.41
anamox2_curated_scaffold_145
Phylum: Bacteroidetes (83.56%)
73 79962 bp 41.43 1.00 92.44
anamox2_curated_scaffold_1658
Order: Sphingobacteriales (80%)
20 18582 bp 40.91 1.00 92.48
anamox2_curated_scaffold_609
Order: Sphingobacteriales (82.14%)
28 36434 bp 41.72 1.00 92.48
anamox2_curated_scaffold_1368
Phylum: Bacteroidetes (70.59%)
17 20853 bp 40.41 1.00 92.56
anamox2_curated_scaffold_10542
Species: Niastella koreensis (50%)
4 4547 bp 41.65 1.00 92.57
Displaying items 51-100 of 129 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.