ggKbase | organisms

Consensus taxonomy: Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: anamox3_Sphingobacteriales_44_6 Manually curated genome
Original version: anamox3_Sphingobacteriales_44_6

Properties

Avg. coverage: 1.00 Longest contig: 29.73 Kbp Bin length: 3.03 Mbp GC content: 42.77 %

Contigs count: 512 Features count: 2768 rRNAs count: 1 tRNAs count: 26

Genome completeness

near complete RP 44 / 55 BSCG 41 / 51 ASCG 9 / 38

Displaying items 451-500 of 512 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
anamox3_curated_scaffold_9255 Order: Sphingobacteriales (66.67%)	3	4146 bp	43.78	1.00	92.62
anamox3_curated_scaffold_39447 Genus: Flavihumibacter (66.67%)	3	3346 bp	36.67	1.00	58.82
anamox3_curated_scaffold_13139 Order: Sphingobacteriales (66.67%)	3	3453 bp	38.81	1.00	43.35
anamox3_curated_scaffold_14767 Order: Cytophagales (66.67%)	3	3171 bp	40.96	1.00	64.71
anamox3_curated_scaffold_15044 Species: Niastella koreensis (66.67%)	3	2953 bp	43.31	1.00	80.87
anamox3_curated_scaffold_14776 Order: Cytophagales (66.67%)	3	3170 bp	40.41	1.00	88.96
anamox3_curated_scaffold_14925 Species: Niastella koreensis (66.67%)	3	3145 bp	44.71	1.00	89.48
anamox3_curated_scaffold_6781 Genus: Flavihumibacter (66.67%)	3	5254 bp	41.63	1.00	67.78
anamox3_curated_scaffold_9504 Species: Flavobacterium frigoris (50%)	2	4471 bp	39.21	1.00	72.47
anamox3_curated_scaffold_8994 Species: Niastella koreensis (100%)	2	4567 bp	41.12	1.00	64.18
anamox3_curated_scaffold_16305 Species: Algoriphagus machipongonensis (50%)	2	4066 bp	42.33	1.00	95.03
anamox3_curated_scaffold_11598 Species: Flavihumibacter solisilvae (50%)	2	3953 bp	43.89	1.00	71.49
anamox3_curated_scaffold_9887 Species: Chitinophaga pinensis (50%)	2	4264 bp	43.39	1.00	69.16
anamox3_curated_scaffold_14275 Species: Pedobacter sp. V48 (50%)	2	3253 bp	42.91	1.00	56.62
anamox3_curated_scaffold_15550 Species: Niastella koreensis (50%)	2	2856 bp	44.75	1.00	85.40
anamox3_curated_scaffold_13647 Species: Flavihumibacter sp. ZG627 (50%)	2	3459 bp	45.82	1.00	98.01
anamox3_curated_scaffold_19904 Species: Dyadobacter fermentans (50%)	2	3274 bp	41.42	1.00	25.47
anamox3_curated_scaffold_11883 Species: Cyclobacterium marinum (50%)	2	3714 bp	41.30	1.00	90.06
anamox3_curated_scaffold_12756 Species: marine sediment metagenome (50%)	2	3533 bp	43.45	1.00	33.03
anamox3_curated_scaffold_14985 Species: Flavihumibacter sp. ZG627 (50%)	2	3134 bp	42.79	1.00	80.79
anamox3_curated_scaffold_13112 Species: Flavihumibacter sp. ZG627 (100%)	2	3459 bp	40.62	1.00	58.80
anamox3_curated_scaffold_25100 Species: Niastella koreensis (100%)	2	3389 bp	44.73	1.00	88.61
anamox3_curated_scaffold_11446 Species: Fibrisoma limi (50%)	2	3757 bp	41.60	1.00	85.36
anamox3_curated_scaffold_9459 Species: Runella slithyformis (50%)	2	4401 bp	41.79	1.00	89.23
anamox3_curated_scaffold_15037 Species: Niastella koreensis (50%)	2	3123 bp	42.94	1.00	99.04
anamox3_curated_scaffold_31262 Species: Niastella koreensis (100%)	2	3288 bp	45.19	1.00	95.62
anamox3_curated_scaffold_15089 Species: Cyclobacterium qasimii (50%)	2	3080 bp	42.63	1.00	17.73
anamox3_curated_scaffold_13236 Species: Pedobacter sp. BAL39 (50%)	2	3434 bp	41.47	1.00	94.70
anamox3_curated_scaffold_9277 Species: GWE2_Bacteroidetes_42_39_curated (100%)	2	4470 bp	43.65	1.00	99.53
anamox3_curated_scaffold_13014 Species: Flavihumibacter petaseus (50%)	2	3463 bp	44.35	1.00	85.50
anamox3_curated_scaffold_18457 Species: Niastella koreensis (50%)	2	3587 bp	44.94	1.00	85.06
anamox3_curated_scaffold_14746 Species: Flavihumibacter solisilvae (100%)	2	3174 bp	43.82	1.00	83.65
anamox3_curated_scaffold_5252 Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)	2	6697 bp	46.18	1.00	76.60
anamox3_curated_scaffold_11164 Species: Flavobacteriales bacterium ALC-1 (50%)	2	3859 bp	38.43	1.00	38.56
anamox3_curated_scaffold_15871 Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)	2	2681 bp	45.73	1.00	87.39
anamox3_curated_scaffold_15748 Species: Niastella koreensis (50%)	2	2614 bp	44.26	1.00	88.37
anamox3_curated_scaffold_14196 Species: Chitinophaga pinensis (50%)	2	3247 bp	41.73	1.00	80.10
anamox3_curated_scaffold_13250 Species: GWE2_Bacteroidetes_42_39_curated (50%)	2	3431 bp	43.02	1.00	99.94
anamox3_curated_scaffold_13960 Species: Niastella koreensis (50%)	2	3302 bp	40.98	1.00	88.04
anamox3_curated_scaffold_12443 Species: Flavihumibacter petaseus (50%)	2	3603 bp	40.44	1.00	75.52
anamox3_curated_scaffold_5761 Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)	2	6265 bp	35.88	1.00	29.78
anamox3_curated_scaffold_7479 Species: Niastella koreensis (100%)	2	5197 bp	45.68	1.00	84.39
anamox3_curated_scaffold_10408 Species: Bacteroides coprophilus CAG:333 (50%)	2	3844 bp	42.43	1.00	76.80
anamox3_curated_scaffold_10254 Species: Leadbetterella byssophila (100%)	2	4107 bp	44.53	1.00	99.63
anamox3_curated_scaffold_15707 Species: Niastella koreensis (50%)	2	3094 bp	46.38	1.00	95.70
anamox3_curated_scaffold_11987 Species: Niastella koreensis (50%)	2	3694 bp	43.10	1.00	44.50
anamox3_curated_scaffold_10908 Species: Runella slithyformis (50%)	2	4139 bp	42.23	1.00	45.30
anamox3_curated_scaffold_34969 Species: Pedobacter kyungheensis (50%)	2	3052 bp	43.35	1.00	71.95
anamox3_curated_scaffold_11417	2	3655 bp	34.58	1.00	10.18
anamox3_curated_scaffold_9679 Species: Sphingobacterium spiritivorum (100%)	2	4143 bp	37.48	1.00	71.98

Displaying items 451-500 of 512 in total

anamox3_Sphingobacteriales_44_6_curated

anamox3_Sphingobacteriales_43_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

anamox3_Sphingobacteriales_44_6_curated

anamox3_Sphingobacteriales_43_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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