ggKbase | organisms

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: anamox1_Bacteria_57_5 Manually curated genome
Original version: anamox1_Bacteria_57_5

Properties

Avg. coverage: 1.00 Longest contig: 19.66 Kbp Bin length: 3.33 Mbp GC content: 56.30 %

Contigs count: 813 Features count: 3846 rRNAs count: 0 tRNAs count: 21

Genome completeness

partial RP 33 / 55 MC: 2 BSCG 35 / 51 MC: 2 ASCG 9 / 38 MC: 2

Displaying items 1-50 of 813 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
anamox1_curated_scaffold_19427 Species: CG_Anaero_03 (100%)	1	2476 bp	56.91	1.00	99.96
anamox1_curated_scaffold_18168 Species: Chloroflexus aggregans (100%)	1	2609 bp	60.71	1.00	99.92
anamox1_curated_scaffold_19424 Species: Roseiflexus castenholzii (100%)	1	2476 bp	58.72	1.00	99.96
anamox1_curated_scaffold_21971 Species: RBG_16_Chloroflexi_63_12_curated (100%)	1	2093 bp	57.00	1.00	88.44
anamox1_curated_scaffold_23057 Species: Thermobaculum terrenum (100%)	1	2119 bp	53.85	1.00	40.92
anamox1_curated_scaffold_13864	1	3241 bp	54.58	1.00	99.88
anamox1_curated_scaffold_17722 Species: Caldilinea aerophila (100%)	1	2658 bp	57.67	1.00	96.84
anamox1_curated_scaffold_21988 Species: RBG_16_Chloroflexi_63_12_curated (100%)	1	2243 bp	56.13	1.00	99.91
anamox1_curated_scaffold_24926 Species: RBG_16_Chloroflexi_57_11_curated (100%)	1	2033 bp	57.16	1.00	93.85
anamox1_curated_scaffold_50792 Species: RBG_13_Chloroflexi_68_17_curated (50%)	2	2288 bp	55.46	1.00	96.50
anamox1_curated_scaffold_20343 Species: RBG_13_Chloroflexi_56_8_curated (50%)	2	2390 bp	60.79	1.00	90.00
anamox1_curated_scaffold_20810 Species: bacterium UASB14 (50%)	2	2348 bp	57.33	1.00	88.67
anamox1_curated_scaffold_12616 Species: Anaerolinea thermophila (50%)	2	3426 bp	58.23	1.00	98.69
anamox1_curated_scaffold_25326 Species: Chloroflexus aggregans (50%)	2	1990 bp	60.65	1.00	96.33
anamox1_curated_scaffold_23233 Species: RBG_16_Chloroflexi_56_8_curated (50%)	2	2143 bp	58.24	1.00	86.65
anamox1_curated_scaffold_14032 Species: Caldilinea aerophila (50%)	2	3248 bp	58.37	1.00	96.89
anamox1_curated_scaffold_19634 Species: RBG_19FT_COMBO_Chloroflexi_55_16_curated (50%)	2	2456 bp	54.03	1.00	81.84
anamox1_curated_scaffold_11443 Species: Caldilinea aerophila (50%)	2	3714 bp	55.14	1.00	99.76
anamox1_curated_scaffold_19747 Species: RBG_13_Chloroflexi_54_9_curated (50%)	2	2445 bp	55.54	1.00	95.21
anamox1_curated_scaffold_14765 Species: RBG_16_Chloroflexi_57_11_curated (100%)	2	3076 bp	58.97	1.00	98.02
anamox1_curated_scaffold_30971 Species: BJP_IG2158_Rhodobacterales_69_12 (50%)	2	2650 bp	53.66	1.00	77.55
anamox1_curated_scaffold_20106 Species: Chloroflexus aggregans (50%)	2	2413 bp	57.85	1.00	87.90
anamox1_curated_scaffold_22482 Species: RBG_13_Chloroflexi_68_17_curated (50%)	2	2171 bp	58.04	1.00	100.18
anamox1_curated_scaffold_11416 Species: Ktedonobacter racemifer (50%)	2	3744 bp	58.44	1.00	99.20
anamox1_curated_scaffold_19139 Species: RBG_19FT_COMBO_Chloroflexi_55_16_curated (50%)	2	2506 bp	57.22	1.00	96.85
anamox1_curated_scaffold_21070 Species: RBG_16_Chloroflexi_56_8_curated (50%)	2	2325 bp	55.61	1.00	93.03
anamox1_curated_scaffold_13330 Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)	2	3304 bp	57.38	1.00	93.61
anamox1_curated_scaffold_49840 Species: CG_Anaero_01 (50%)	2	2062 bp	59.65	1.00	78.42
anamox1_curated_scaffold_18316 Species: BJP_IG2158_Anaerolineales_38_74 (50%)	2	3185 bp	55.35	1.00	86.00
anamox1_curated_scaffold_23586 Species: uncultured bacterium (50%)	2	2089 bp	56.49	1.00	97.51
anamox1_curated_scaffold_15692 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2933 bp	57.14	1.00	96.56
anamox1_curated_scaffold_22960	2	2171 bp	56.20	1.00	97.84
anamox1_curated_scaffold_22193 Species: Herpetosiphon aurantiacus (50%)	2	2229 bp	56.71	1.00	97.71
anamox1_curated_scaffold_9714 Species: Sphaerobacter thermophilus (50%)	2	5076 bp	54.96	1.00	88.06
anamox1_curated_scaffold_24066 Species: CG_Anaero_02 (50%)	2	1763 bp	58.08	1.00	65.00
anamox1_curated_scaffold_22464 Species: RBG_16_Chloroflexi_57_11_curated (50%)	2	2207 bp	57.95	1.00	94.88
anamox1_curated_scaffold_23925 Species: RBG_16_Chloroflexi_63_12_curated (50%)	2	2099 bp	56.17	1.00	84.90
anamox1_curated_scaffold_22376 Species: CG_Anaero_02 (50%)	2	1799 bp	56.09	1.00	98.39
anamox1_curated_scaffold_21160 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2319 bp	60.97	1.00	93.01
anamox1_curated_scaffold_23023 Species: RBG_16_Chloroflexi_58_14_curated (50%)	2	2128 bp	52.26	1.00	65.55
anamox1_curated_scaffold_24895 Species: RBG_16_Chloroflexi_58_14_curated (50%)	2	1971 bp	53.93	1.00	96.96
anamox1_curated_scaffold_25228 Species: Herpetosiphon aurantiacus (50%)	2	2014 bp	56.80	1.00	91.16
anamox1_curated_scaffold_24551 Species: RBG_16_Chloroflexi_57_9_curated (50%)	2	2059 bp	55.08	1.00	93.54
anamox1_curated_scaffold_21993 Species: RLO_PLX_64_10 (50%)	2	2178 bp	58.63	1.00	94.08
anamox1_curated_scaffold_20956 Species: Roseiflexus castenholzii (50%)	2	2335 bp	55.37	1.00	79.02
anamox1_curated_scaffold_12655 Species: RBG_13_Chloroflexi_56_8_curated (50%)	2	3450 bp	59.04	1.00	95.74
anamox1_curated_scaffold_12411 Species: bacterium UASB14 (50%)	2	3495 bp	62.89	1.00	99.57
anamox1_curated_scaffold_15490 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2934 bp	61.25	1.00	97.44
anamox1_curated_scaffold_22486 Species: CG_Anaero_02 (50%)	2	2131 bp	59.13	1.00	97.28
anamox1_curated_scaffold_22649 Species: marine sediment metagenome (50%)	2	2164 bp	61.04	1.00	88.03

Displaying items 1-50 of 813 in total

anamox1_Bacteria_57_5_curated

anamox1_Bacteria_56_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

anamox1_Bacteria_57_5_curated

anamox1_Bacteria_56_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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