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anamox1_Bacteria_65_5_curated

anamox1_Bacteria_65_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: anamox1_Bacteria_65_5 Manually curated genome
Original version: anamox1_Bacteria_65_5

Properties

Avg. coverage: 1.00 Longest contig: 15.42 Kbp Bin length: 2.09 Mbp GC content: 64.54 %
Contigs count: 434 Features count: 2237 rRNAs count: 0 tRNAs count: 42

Genome completeness

partial RP 33 / 55 MC: 2 BSCG 31 / 51 ASCG 8 / 38
Displaying items 401-434 of 434 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_16134
Phylum: Planctomycetes (66.67%)
3 2789 bp 58.98 1.00 71.96
anamox1_curated_scaffold_13830 3 3248 bp 65.67 1.00 90.42
anamox1_curated_scaffold_19052 3 2515 bp 63.10 1.00 93.40
anamox1_curated_scaffold_12205
Domain: Bacteria (100%)
3 3508 bp 67.22 1.00 100.14
anamox1_curated_scaffold_15092
Species: RBG_16_RIF03_38_11_curated (50%)
2 2917 bp 65.17 1.00 98.42
anamox1_curated_scaffold_23253
Species: Pirellula staleyi (50%)
2 3141 bp 64.18 1.00 59.69
anamox1_curated_scaffold_16776
Species: Mycobacterium neoaurum (50%)
2 2716 bp 61.41 1.00 85.94
anamox1_curated_scaffold_15796
Species: marine sediment metagenome (50%)
2 2910 bp 62.30 1.00 57.11
anamox1_curated_scaffold_16836
Species: RLO_Planctomycetes_39_13 (50%)
2 2535 bp 62.60 1.00 86.75
anamox1_curated_scaffold_13570
Species: Opitutus terrae (50%)
2 3203 bp 66.47 1.00 97.03
anamox1_curated_scaffold_9777
Species: Nitrospina gracilis (50%)
2 4237 bp 64.24 1.00 92.33
anamox1_curated_scaffold_16594
Species: GWA2_WOR_2_45_18_curated (50%)
2 2809 bp 64.58 1.00 96.97
anamox1_curated_scaffold_16820
Species: BJP_IG2102_ACD39_51_10 (50%)
2 2774 bp 68.78 1.00 94.41
anamox1_curated_scaffold_18187
Species: Desulfotomaculum kuznetsovii (50%)
2 2607 bp 65.40 1.00 93.10
anamox1_curated_scaffold_8889
Species: Bacillus wakoensis (50%)
2 5635 bp 60.39 1.00 78.26
anamox1_curated_scaffold_15112
Species: RLO_Rokubacteria_71_22 (50%)
2 3020 bp 64.27 1.00 94.97
anamox1_curated_scaffold_29604
Species: RBG_16_Planctomycetes_59_8_curated (100%)
2 3266 bp 61.70 1.00 59.43
anamox1_curated_scaffold_15563
Species: GWF2_Lentisphaerae_49_21_curated (50%)
2 2907 bp 63.98 1.00 96.18
anamox1_curated_scaffold_12917
Species: Cesiribacter andamanensis (50%)
2 3352 bp 63.54 1.00 93.62
anamox1_curated_scaffold_16448
Species: Bacillus pseudofirmus (50%)
2 2727 bp 63.95 1.00 85.92
anamox1_curated_scaffold_19124
Species: Opitutaceae bacterium TAV5 (50%)
2 2507 bp 63.02 1.00 45.83
anamox1_curated_scaffold_12297
Species: R_OP3X_45_16 (50%)
2 3546 bp 63.34 1.00 96.79
anamox1_curated_scaffold_14123
Species: Singulisphaera acidiphila (50%)
2 3194 bp 65.59 1.00 94.87
anamox1_curated_scaffold_12415
Species: mine drainage metagenome (50%)
2 3523 bp 63.70 1.00 94.52
anamox1_curated_scaffold_13178
Species: Chthonomonas calidirosea (50%)
2 2847 bp 63.96 1.00 95.57
anamox1_curated_scaffold_17910 2 2619 bp 70.45 1.00 89.58
anamox1_curated_scaffold_13477
Species: Rhodopirellula sp. SWK7 (50%)
2 3312 bp 64.82 1.00 95.83
anamox1_curated_scaffold_9510
Species: Sandaracinus amylolyticus (50%)
2 3930 bp 69.67 1.00 87.25
anamox1_curated_scaffold_17871
Species: RHI_Planctomycetes_52_36 (50%)
2 2541 bp 64.62 1.00 82.29
anamox1_curated_scaffold_12161
Species: GWF2_Lentisphaerae_49_21_curated (50%)
2 3427 bp 67.03 1.00 99.88
anamox1_curated_scaffold_14855
Species: Planctopirus limnophila (50%)
2 3062 bp 66.33 1.00 94.25
anamox1_curated_scaffold_18273 1 2576 bp 66.03 1.00 90.61
anamox1_curated_scaffold_16165 1 2751 bp 69.10 1.00 99.89
anamox1_curated_scaffold_17299
Species: Clostridium sp. CAG:1024 (100%)
1 2716 bp 67.64 1.00 93.45
Displaying items 401-434 of 434 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.