ggKbase home page
Advanced Search
Search Help

anamox1_Betaproteobacteria_69_7_curated

anamox1_Betaproteobacteria_66_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup  |  anammox_full

Consensus taxonomy: Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: anamox1_Betaproteobacteria_69_7 Manually curated genome
Original version: anamox1_Betaproteobacteria_69_7

Properties

Avg. coverage: 1.00 Longest contig: 12.35 Kbp Bin length: 2.11 Mbp GC content: 66.39 %
Contigs count: 531 Features count: 2636 rRNAs count: 0 tRNAs count: 24

Genome completeness

near complete RP 42 / 55 BSCG 45 / 51 MC: 1 ASCG 11 / 38 MC: 1
Displaying items 301-350 of 531 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_16348
Class: Betaproteobacteria (75%)
4 3323 bp 69.15 1.00 91.81
anamox1_curated_scaffold_36197
Class: Betaproteobacteria (100%)
4 2615 bp 66.31 1.00 71.82
anamox1_curated_scaffold_15715
Species: Polaromonas sp. JS666 (50%)
4 2918 bp 67.44 1.00 93.87
anamox1_curated_scaffold_12249
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)
4 3563 bp 69.10 1.00 88.32
anamox1_curated_scaffold_8717
Class: Betaproteobacteria (50%)
4 4793 bp 70.33 1.00 94.33
anamox1_curated_scaffold_13503
Domain: Bacteria (50%)
4 3162 bp 63.92 1.00 24.67
anamox1_curated_scaffold_20666
Class: Betaproteobacteria (100%)
4 3337 bp 67.91 1.00 72.64
anamox1_curated_scaffold_9573
Genus: Acidovorax (50%)
4 4340 bp 65.32 1.00 73.13
anamox1_curated_scaffold_11164
Class: Betaproteobacteria (75%)
4 3666 bp 63.61 1.00 70.54
anamox1_curated_scaffold_18689
Class: Betaproteobacteria (75%)
4 2589 bp 64.81 1.00 70.22
anamox1_curated_scaffold_15943
Class: Betaproteobacteria (50%)
4 2858 bp 66.10 1.00 80.83
anamox1_curated_scaffold_18982
Order: Burkholderiales (50%)
4 2728 bp 68.55 1.00 95.12
anamox1_curated_scaffold_13707 4 2798 bp 63.40 1.00 47.39
anamox1_curated_scaffold_13340
Class: Betaproteobacteria (50%)
4 3333 bp 64.93 1.00 72.01
anamox1_curated_scaffold_17883
Class: Betaproteobacteria (100%)
4 2418 bp 68.73 1.00 89.45
anamox1_curated_scaffold_16217
Class: Betaproteobacteria (75%)
4 2826 bp 70.45 1.00 100.43
anamox1_curated_scaffold_8173
Species: GWA2_Burkholderiales_64_37_curated (50%)
4 4927 bp 68.01 1.00 94.13
anamox1_curated_scaffold_18951
Species: RLO_Betaproteobacteria_65_14 (50%)
4 2715 bp 69.06 1.00 84.53
anamox1_curated_scaffold_14785
Species: Herbaspirillum frisingense (50%)
4 3316 bp 66.22 1.00 85.95
anamox1_curated_scaffold_11787
Class: Betaproteobacteria (50%)
4 3191 bp 72.02 1.00 88.56
anamox1_curated_scaffold_10403
Class: Betaproteobacteria (50%)
4 4301 bp 64.80 1.00 83.35
anamox1_curated_scaffold_11382
Class: Betaproteobacteria (50%)
4 3646 bp 69.56 1.00 82.61
anamox1_curated_scaffold_18325
Species: Ralstonia sp. PBA (50%)
4 2747 bp 67.02 1.00 82.67
anamox1_curated_scaffold_14962
Order: Burkholderiales (50%)
4 3020 bp 64.83 1.00 77.48
anamox1_curated_scaffold_12632
Class: Betaproteobacteria (100%)
4 3839 bp 69.42 1.00 94.71
anamox1_curated_scaffold_12704
Class: Betaproteobacteria (50%)
4 3464 bp 60.88 1.00 71.80
anamox1_curated_scaffold_15772
Class: Betaproteobacteria (50%)
4 2909 bp 72.43 1.00 93.02
anamox1_curated_scaffold_13532
Species: Bordetella holmesii (50%)
4 3557 bp 67.78 1.00 89.91
anamox1_curated_scaffold_8373
Order: Rhodocyclales (50%)
4 4724 bp 65.79 1.00 91.89
anamox1_curated_scaffold_18764
Order: Burkholderiales (50%)
4 2938 bp 69.06 1.00 86.08
anamox1_curated_scaffold_10193
Phylum: Proteobacteria (50%)
4 4119 bp 67.44 1.00 88.27
anamox1_curated_scaffold_12621
Class: Betaproteobacteria (75%)
4 3369 bp 71.59 1.00 100.53
anamox1_curated_scaffold_15765
Order: Burkholderiales (50%)
4 3685 bp 66.46 1.00 52.75
anamox1_curated_scaffold_18639
Order: Burkholderiales (50%)
4 2553 bp 66.55 1.00 97.06
anamox1_curated_scaffold_15568
Class: Betaproteobacteria (50%)
4 2934 bp 71.30 1.00 91.00
anamox1_curated_scaffold_11955
Class: Betaproteobacteria (100%)
4 3510 bp 66.55 1.00 89.06
anamox1_curated_scaffold_11412
Order: Burkholderiales (50%)
4 3728 bp 67.46 1.00 82.08
anamox1_curated_scaffold_10068
Species: RLO_Betaproteobacteria_65_14 (75%)
4 4034 bp 69.86 1.00 91.62
anamox1_curated_scaffold_17652
Class: Betaproteobacteria (75%)
4 2432 bp 62.62 1.00 72.16
anamox1_curated_scaffold_13282
Species: RBG_16_Betaproteobacteria_64_18_curated (50%)
4 3694 bp 63.35 1.00 67.33
anamox1_curated_scaffold_8628
Order: Burkholderiales (50%)
4 4425 bp 67.53 1.00 89.63
anamox1_curated_scaffold_10762
Class: Betaproteobacteria (50%)
4 3939 bp 69.76 1.00 90.33
anamox1_curated_scaffold_14081
Order: Burkholderiales (100%)
4 3490 bp 69.20 1.00 93.87
anamox1_curated_scaffold_15960 4 2846 bp 60.54 1.00 37.32
anamox1_curated_scaffold_15360
Order: Burkholderiales (50%)
4 2825 bp 60.04 1.00 67.43
anamox1_curated_scaffold_22220
Class: Betaproteobacteria (50%)
4 2422 bp 63.01 1.00 94.26
anamox1_curated_scaffold_15480
Class: Betaproteobacteria (50%)
4 2957 bp 62.33 1.00 40.28
anamox1_curated_scaffold_17229
Domain: Bacteria (50%)
4 2724 bp 64.28 1.00 82.71
anamox1_curated_scaffold_29332
Class: Gammaproteobacteria (50%)
4 2606 bp 65.58 1.00 86.91
anamox1_curated_scaffold_16975
Order: Burkholderiales (50%)
4 2993 bp 65.72 1.00 82.19
Displaying items 301-350 of 531 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.