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anamox1_curated_scaffold_562

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Displaying items 91-120 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_562_trna_2
unknown

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comp(97520..97606)
DNA (87bp)
transferRNA Ser
anamox1_curated_scaffold_562_90
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(97686..98981)
DNA (1296bp) protein (432aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
serS; seryl-tRNA synthetase SerS (EC:6.1.1.11)
Serine--tRNA ligase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVG9_9BURK
anamox1_curated_scaffold_562_91
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(99060..100013)
DNA (954bp) protein (318aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
4-hydroxy-3-methylbut-2-enyl diphosphate reductase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV34_RUBGI
anamox1_curated_scaffold_562_92
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(100010..100549)
DNA (540bp) protein (180aa)
fkpB; FKBP-type peptidyl-prolyl cis-trans isomerase FkpB (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
peptidylprolyl isomerase Tax=Caldimonas manganoxidans RepID=UPI0003809758
anamox1_curated_scaffold_562_93
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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100573..101247
DNA (675bp) protein (225aa)
DNA repair protein RadC Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV36_RUBGI
radC; DNA repair protein RadC
DNA repair protein RadC {ECO:0000313|EMBL:BAL96873.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_94
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

101244..101924
DNA (681bp) protein (227aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV37_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96874.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_95
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(102066..104465)
DNA (2400bp) protein (800aa)
Putative dehydrogenase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21X14_RHOFD
putative dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
anamox1_curated_scaffold_562_96
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(104505..105878)
DNA (1374bp) protein (458aa)
Iron-containing alcohol dehydrogenase Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21X13_RHOFD
iron-containing alcohol dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
anamox1_curated_scaffold_562_97
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105998..106783)
DNA (786bp) protein (262aa)
cobyrinic acid a,c-diamide synthase Tax=Ideonella sp. B508-1 RepID=UPI0003B33F26
fleN; flagellar synthesis regulator FleN
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_98
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(106776..107441)
DNA (666bp) protein (222aa)
Diguanylate cyclase (GGDEF) domain-containing protein Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMW4_9BURK
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EHR70537.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
diguanylate cyclase
anamox1_curated_scaffold_562_99
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107792..108643
DNA (852bp) protein (284aa)
cheR; chemotaxis protein methyltransferase CheR (EC:2.1.1.80)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Chemotaxis protein methyltransferase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV44_RUBGI
anamox1_curated_scaffold_562_100
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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108663..109424
DNA (762bp) protein (254aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
Probable chemoreceptor glutamine deamidase CheD Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SJB6_METPP
cheD; chemoreceptor glutamine deamidase CheD
anamox1_curated_scaffold_562_101
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109421..110518
DNA (1098bp) protein (366aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
cheB; protein-glutamate methylesterase CheB (EC:3.1.1.61)
Chemotaxis response regulator protein-glutamate methylesterase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVH9_9BURK
anamox1_curated_scaffold_562_102
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(110519..111775)
DNA (1257bp) protein (419aa)
hemN; oxygen-independent coproporphyrinogen III oxidase HemN (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVI1_9BURK
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EGJ12349.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
anamox1_curated_scaffold_562_103
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(111768..112406)
DNA (639bp) protein (213aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
hypothetical protein Tax=Caldimonas manganoxidans RepID=UPI000364BEC4
deoxyribonucleotide triphosphate pyrophosphatase
anamox1_curated_scaffold_562_104
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112414..113154)
DNA (741bp) protein (247aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Ribonuclease PH Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV50_RUBGI
anamox1_curated_scaffold_562_105
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113277..114194)
DNA (918bp) protein (306aa)
putative protein phosphatase 2C-type (EC:3.1.3.16)
Serine/threonine protein phosphatase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMV7_9BURK
Serine/threonine protein phosphatase {ECO:0000313|EMBL:EHR70530.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
anamox1_curated_scaffold_562_106
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(114211..115179)
DNA (969bp) protein (323aa)
Serine/threonine protein kinase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV52_RUBGI
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:BAL96889.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_107
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115209..116108
DNA (900bp) protein (300aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV53_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96890.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_108
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

116219..117376
DNA (1158bp) protein (386aa)
membrane protein Tax=Pseudomonas fluorescens RepID=UPI0002D31247
saccharopine dehydrogenase family protein
Saccharopine dehydrogenase family protein {ECO:0000313|EMBL:AJZ62167.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
anamox1_curated_scaffold_562_109
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117388..118155
DNA (768bp) protein (256aa)
hypothetical protein bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_562_110
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(118115..119629)
DNA (1515bp) protein (505aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HR75_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL95512.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_111
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(119643..120107)
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUR3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ12081.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
anamox1_curated_scaffold_562_112
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(120325..122151)
DNA (1827bp) protein (609aa)
Putative secretion pathway ATPase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HR73_RUBGI
putative secretion pathway ATPase
Putative secretion pathway ATPase {ECO:0000313|EMBL:BAL95510.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_113
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122201..123055)
DNA (855bp) protein (285aa)
Spermidine synthase-like protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HR72_RUBGI
spermidine synthase-like protein
Spermidine synthase-like protein {ECO:0000313|EMBL:BAL95509.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_114
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123060..123656)
DNA (597bp) protein (199aa)
Putative G:T/U mismatch-specific DNA glycosylase Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CPH1_THIA3
putative G:T/U mismatch-specific DNA glycosylase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_562_115
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(123649..124476)
DNA (828bp) protein (276aa)
Mg-dependent DNase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS22_9BURK
putative endodeoxyribonuclease
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_562_116
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

124617..125654
DNA (1038bp) protein (346aa)
Putative S1B family peptidase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HR68_RUBGI
putative S1B family peptidase
Putative S1B family peptidase {ECO:0000313|EMBL:BAL95505.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_117
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125705..126697
DNA (993bp) protein (331aa)
ATPase-like protein Tax=Hydrogenophaga sp. PBC RepID=I4MLT0_9BURK
ATPase
ATPase associated with various cellular activities, AAA_3 {ECO:0000313|EMBL:BAL95504.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_562_118
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

126726..127754
DNA (1029bp) protein (343aa)
Putative uncharacterized protein Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS26_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR72344.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
Displaying items 91-120 of 143 in total

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