ggKbase home page

anamox1_curated_scaffold_172

Search features with annotation key words

Displaying items 31-60 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
anamox1_curated_scaffold_172_30
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38387..42283)
DNA (3897bp) protein (1299aa)
ATP-dependent RNA helicase HrpA {ECO:0000313|EMBL:BAL96036.1}; EC=3.6.1.- {ECO:0000313|EMBL:BAL96036.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
hrpA; ATP-dependent RNA helicase HrpA (EC:3.6.1.-)
ATP-dependent RNA helicase HrpA Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSP9_RUBGI
anamox1_curated_scaffold_172_31
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42348..43688
DNA (1341bp) protein (447aa)
N-acetylglutamate synthase (EC:2.3.1.1)
amino acid acetyltransferase Tax=Caldimonas manganoxidans RepID=UPI000368A989
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_172_32
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43710..43982
DNA (273bp) protein (91aa)
Probable Fe(2+)-trafficking protein Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKT6_9BURK
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
yggX; Fe(II) trafficking protein YggX
anamox1_curated_scaffold_172_33
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44099..45142
DNA (1044bp) protein (348aa)
Putative iron-uptake ABC transporter, periplasmic iron-binding protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSQ3_RUBGI
fbpA; putative iron-uptake ABC transporter, periplasmic iron-binding protein
Putative iron-uptake ABC transporter, periplasmic iron-binding protein {ECO:0000313|EMBL:BAL96040.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_172_34
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45219..45533
DNA (315bp) protein (105aa)
H-NS histone family protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSQ4_RUBGI
H-NS histone family protein
H-NS histone family protein {ECO:0000313|EMBL:BAL96041.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_172_35
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45849..48641
DNA (2793bp) protein (931aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKT3_9BURK
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:EGJ08951.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
anamox1_curated_scaffold_172_36
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48652..50568
DNA (1917bp) protein (639aa)
dnaG; DNA primase DnaG (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
DNA primase Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSQ6_RUBGI
anamox1_curated_scaffold_172_37
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50831..53251
DNA (2421bp) protein (807aa)
RNA polymerase sigma factor Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVA4_9BURK
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
rpoD; RNA polymerase primary sigma factor RpoD
anamox1_curated_scaffold_172_38
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53286..54263
DNA (978bp) protein (326aa)
Adenylate cyclase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVA3_9BURK
Adenylate cyclase {ECO:0000313|EMBL:EGJ12271.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
putative AMP or GMP cyclase containing FHA domain
anamox1_curated_scaffold_172_39
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54269..55297
DNA (1029bp) protein (343aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|SAAS:SAAS00128522};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hemH; ferrochelatase HemH (EC:4.99.1.1)
Ferrochelatase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVA1_9BURK
anamox1_curated_scaffold_172_40
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(55323..58085)
DNA (2763bp) protein (921aa)
Extracellular serine protease Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH39_TISMK
Extracellular serine protease
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_172_41
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58450..58872
DNA (423bp) protein (141aa)
Ribosome-associated heat shock protein Hsp15, HslR Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSR2_RUBGI
hslR; ribosome-associated heat shock protein Hsp15, HslR
Ribosome-associated heat shock protein Hsp15, HslR {ECO:0000313|EMBL:BAL96049.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
anamox1_curated_scaffold_172_42
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58963..59484
DNA (522bp) protein (174aa)
Protein GrpE Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LV99_9BURK
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
grpE; molecular chaperone GrpE
anamox1_curated_scaffold_172_43
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59590..61533
DNA (1944bp) protein (648aa)
Chaperone protein DnaK Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HSR4_RUBGI
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
dnaK; chaperone protein DnaK
anamox1_curated_scaffold_172_44
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61647..62789
DNA (1143bp) protein (381aa)
Chaperone protein DnaJ Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRB0_9BURK
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
dnaJ; molecular chaperone DnaJ
anamox1_curated_scaffold_172_45
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62821..63831)
DNA (1011bp) protein (337aa)
Peptidoglycan-binding domain 1 protein Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6V9_ALIDK
peptidoglycan-binding domain-containing protein
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:AEB86571.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
anamox1_curated_scaffold_172_46
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64073..64519
DNA (447bp) protein (149aa)
Transmembrane pair domain-containing protein Tax=Acidovorax sp. NO-1 RepID=H0BUE5_9BURK
transmembrane pair domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
anamox1_curated_scaffold_172_47
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(64529..67171)
DNA (2643bp) protein (881aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
alaS; alanyl-tRNA synthetase AlaS (EC:6.1.1.7)
Alanine--tRNA ligase Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVD5_9BURK
anamox1_curated_scaffold_172_48
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67168..67620)
DNA (453bp) protein (151aa)
hypothetical protein Tax=Thioalkalivibrio RepID=UPI000362BEB4
twitching motility protein PilT
Tax=RBG_16_Betaproteobacteria_56_24_curated
anamox1_curated_scaffold_172_49
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67617..67862)
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SME8_METPP
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_172_50
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67949..68869)
DNA (921bp) protein (307aa)
LysR family transcriptional regulator Tax=Ideonella sp. B508-1 RepID=UPI000345861A
Putative transcriptional regulator {ECO:0000313|EMBL:EIN02403.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
bacterial regulatory helix-turn-helix , lysR family protein
anamox1_curated_scaffold_172_51
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68982..70175
DNA (1194bp) protein (398aa)
Acyl-CoA dehydrogenase domain protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y4M3_LEPCP
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACB33462.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
anamox1_curated_scaffold_172_52
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

70189..71376
DNA (1188bp) protein (396aa)
hypothetical protein Tax=Caldimonas manganoxidans RepID=UPI00035F1292
predicted acyl-CoA transferase/carnitine dehydratase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_172_53
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

71410..72888
DNA (1479bp) protein (493aa)
gabD; succinate-semialdehyde dehydrogenase (NADP+) GabD (EC:1.2.1.16)
Succinate-semialdehyde dehydrogenase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQK4_9BURK
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_172_54
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72892..73818)
DNA (927bp) protein (309aa)
Diguanylate cyclase (GGDEF) domain-containing protein Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQK8_9BURK
diguanylate cyclase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
anamox1_curated_scaffold_172_55
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73919..75142)
DNA (1224bp) protein (408aa)
MFS transporter Tax=Acidovorax sp. MR-S7 RepID=UPI00036EE0EE
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAD21692.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
MFS transporter
anamox1_curated_scaffold_172_56
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75561..76469)
DNA (909bp) protein (303aa)
D-alanyl-D-alanine endopeptidase Tax=Azoarcus toluclasticus RepID=UPI0003695B8D
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00483.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
anamox1_curated_scaffold_172_57
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76606..77982)
DNA (1377bp) protein (459aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
two-component sensor (EC:2.7.3.-)
Heavy metal sensor kinase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMF5_9BURK
anamox1_curated_scaffold_172_58
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77979..78665)
DNA (687bp) protein (229aa)
Heavy metal response regulator Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMF6_9BURK
Transcriptional activator protein CzcR {ECO:0000313|EMBL:EWS56586.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
two-component response regulator
anamox1_curated_scaffold_172_59
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

78830..79168
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TT42_ALIDB
Uncharacterized protein {ECO:0000313|EMBL:GAO23353.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
Displaying items 31-60 of 65 in total

View Taxonomy