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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 101-150 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_26241 6 2794 bp 41.91 6.60 92.95
SRVP18_trench_6_60cm_scaffold_11825 6 4633 bp 40.38 5.67 92.92
SRVP18_trench_6_60cm_scaffold_23598 4 2994 bp 47.39 4.56 92.69
SRVP18_trench_6_60cm_scaffold_15013 4 3987 bp 42.01 4.67 92.63
SRVP18_trench_6_60cm_scaffold_4996 6 7846 bp 38.13 5.28 92.57
SRVP18_trench_6_60cm_scaffold_27761 3 3254 bp 43.24 5.07 92.56
SRVP18_trench_6_60cm_scaffold_26360 4 2785 bp 43.41 6.41 92.53
SRVP18_trench_6_60cm_scaffold_5578 12 8780 bp 43.25 6.82 92.39
SRVP18_trench_6_60cm_scaffold_14460 5 4084 bp 38.25 5.62 92.34
SRVP18_trench_6_60cm_scaffold_30224
Domain: Archaea (60%)
5 3052 bp 42.01 5.11 92.30
SRVP18_trench_6_60cm_scaffold_8739 8 5571 bp 44.48 5.98 92.30
SRVP18_trench_6_60cm_scaffold_22160 7 5188 bp 43.93 6.51 92.27
SRVP18_trench_6_60cm_scaffold_21951 7 4292 bp 44.27 5.42 91.99
SRVP18_trench_6_60cm_scaffold_27860
Species: Candidatus Methanoperedens nitroreducens (66.67%)
3 2686 bp 37.75 7.71 91.92
SRVP18_trench_6_60cm_scaffold_12728 5 5866 bp 41.85 5.86 91.90
SRVP18_trench_6_60cm_scaffold_20834 5 3239 bp 44.58 5.46 91.79
SRVP18_trench_6_60cm_scaffold_23677 12 5502 bp 43.15 6.49 91.77
SRVP18_trench_6_60cm_scaffold_118994 1 1060 bp 42.36 4.95 91.70
SRVP18_trench_6_60cm_scaffold_16068 3 6349 bp 38.13 6.19 91.62
SRVP18_trench_6_60cm_scaffold_17706 4 3592 bp 45.04 5.55 91.54
SRVP18_trench_6_60cm_scaffold_27456 12 7827 bp 39.87 5.00 91.41
SRVP18_trench_6_60cm_scaffold_39542 3 2143 bp 42.65 5.04 91.41
SRVP18_trench_6_60cm_scaffold_14384 9 4098 bp 42.95 6.41 91.29
SRVP18_trench_6_60cm_scaffold_15425 8 3920 bp 43.83 5.85 91.22
SRVP18_trench_6_60cm_scaffold_10339 7 5575 bp 41.24 5.97 91.16
SRVP18_trench_6_60cm_scaffold_20616 5 4301 bp 45.64 5.41 91.10
SRVP18_trench_6_60cm_scaffold_5161 21 13867 bp 41.28 6.10 91.08
SRVP18_trench_6_60cm_scaffold_25434 6 2849 bp 42.86 5.69 90.98
SRVP18_trench_6_60cm_scaffold_12674 6 4434 bp 40.55 5.75 90.93
SRVP18_trench_6_60cm_scaffold_16173 8 5666 bp 39.78 5.16 90.91
SRVP18_trench_6_60cm_scaffold_46152 4 3117 bp 37.09 6.83 90.86
SRVP18_trench_6_60cm_scaffold_20181 4 6133 bp 41.02 5.28 90.84
SRVP18_trench_6_60cm_scaffold_13311 4 4310 bp 41.81 5.32 90.84
SRVP18_trench_6_60cm_scaffold_10981 9 4844 bp 43.97 6.01 90.79
SRVP18_trench_6_60cm_scaffold_10553 6 4962 bp 44.10 6.59 90.63
SRVP18_trench_6_60cm_scaffold_27573 5 4273 bp 38.45 5.48 90.50
SRVP18_trench_6_60cm_scaffold_20526
Species: Candidatus Methanoperedens nitroreducens (57.14%)
7 3966 bp 42.64 5.64 90.44
SRVP18_trench_6_60cm_scaffold_27847 5 3183 bp 42.04 7.21 90.39
SRVP18_trench_6_60cm_scaffold_85724 2 1305 bp 42.15 6.32 90.34
SRVP18_trench_6_60cm_scaffold_49480
Species: Methanomethylovorans hollandica (60%)
5 4958 bp 38.42 5.08 90.34
SRVP18_trench_6_60cm_scaffold_30712 7 4469 bp 42.54 5.17 90.15
SRVP18_trench_6_60cm_scaffold_23861 7 5735 bp 41.78 5.18 90.13
SRVP18_trench_6_60cm_scaffold_23786 10 8085 bp 41.48 6.29 90.13
SRVP18_trench_6_60cm_scaffold_12621 3 4448 bp 42.54 5.29 90.11
SRVP18_trench_6_60cm_scaffold_26686 4 2762 bp 40.88 4.40 90.04
SRVP18_trench_6_60cm_scaffold_13923
Species: Candidatus Methanoperedens nitroreducens (50%)
2 4188 bp 41.31 6.09 90.04
SRVP18_trench_6_60cm_scaffold_25760 3 2826 bp 45.33 5.41 89.92
SRVP18_trench_6_60cm_scaffold_18354
Species: Candidatus Methanoperedens nitroreducens (75%)
4 3511 bp 42.92 5.60 89.89
SRVP18_trench_6_60cm_scaffold_26540
Species: Candidatus Methanoperedens nitroreducens (50%)
4 2772 bp 45.45 5.09 89.83
SRVP18_trench_6_60cm_scaffold_92851 4 2297 bp 42.36 5.62 89.73
Displaying items 101-150 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.