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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 201-250 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_49247 7 4227 bp 39.48 5.78 88.36
SRVP18_trench_6_60cm_scaffold_42834 4 2502 bp 44.44 6.65 88.37
SRVP18_trench_6_60cm_scaffold_64181
Order: Methanosarcinales (60%)
5 3110 bp 42.54 5.55 88.46
SRVP18_trench_6_60cm_scaffold_35424 6 3674 bp 47.58 5.39 88.51
SRVP18_trench_6_60cm_scaffold_15625 7 6449 bp 39.01 6.12 88.57
SRVP18_trench_6_60cm_scaffold_29372 4 4152 bp 40.73 6.39 88.58
SRVP18_trench_6_60cm_scaffold_19179
Species: Methanococcoides methylutens (50%)
2 3415 bp 38.95 6.76 88.64
SRVP18_trench_6_60cm_scaffold_13762 8 5664 bp 45.76 5.27 88.70
SRVP18_trench_6_60cm_scaffold_11163
Order: Methanosarcinales (50%)
10 4795 bp 37.94 6.23 88.72
SRVP18_trench_6_60cm_scaffold_37852 9 4061 bp 44.47 6.24 88.72
SRVP18_trench_6_60cm_scaffold_38379 3 2185 bp 42.33 3.98 88.83
SRVP18_trench_6_60cm_scaffold_24655 6 5654 bp 42.85 5.73 88.88
SRVP18_trench_6_60cm_scaffold_17723 3 3591 bp 42.13 5.56 88.97
SRVP18_trench_6_60cm_scaffold_8583 10 5637 bp 42.70 4.95 88.98
SRVP18_trench_6_60cm_scaffold_15244 7 5316 bp 41.78 5.16 89.00
SRVP18_trench_6_60cm_scaffold_86152 7 2389 bp 41.19 5.71 89.03
SRVP18_trench_6_60cm_scaffold_14063 3 4164 bp 42.94 5.58 89.05
SRVP18_trench_6_60cm_scaffold_19155 6 3911 bp 45.44 6.41 89.44
SRVP18_trench_6_60cm_scaffold_58254 7 2794 bp 39.33 5.37 89.55
SRVP18_trench_6_60cm_scaffold_30360
Species: Candidatus Methanoperedens nitroreducens (50%)
4 2539 bp 43.52 6.09 89.56
SRVP18_trench_6_60cm_scaffold_72461 6 3060 bp 42.94 5.93 89.71
SRVP18_trench_6_60cm_scaffold_92851 4 2297 bp 42.36 5.62 89.73
SRVP18_trench_6_60cm_scaffold_26540
Species: Candidatus Methanoperedens nitroreducens (50%)
4 2772 bp 45.45 5.09 89.83
SRVP18_trench_6_60cm_scaffold_18354
Species: Candidatus Methanoperedens nitroreducens (75%)
4 3511 bp 42.92 5.60 89.89
SRVP18_trench_6_60cm_scaffold_25760 3 2826 bp 45.33 5.41 89.92
SRVP18_trench_6_60cm_scaffold_13923
Species: Candidatus Methanoperedens nitroreducens (50%)
2 4188 bp 41.31 6.09 90.04
SRVP18_trench_6_60cm_scaffold_26686 4 2762 bp 40.88 4.40 90.04
SRVP18_trench_6_60cm_scaffold_12621 3 4448 bp 42.54 5.29 90.11
SRVP18_trench_6_60cm_scaffold_23786 10 8085 bp 41.48 6.29 90.13
SRVP18_trench_6_60cm_scaffold_23861 7 5735 bp 41.78 5.18 90.13
SRVP18_trench_6_60cm_scaffold_30712 7 4469 bp 42.54 5.17 90.15
SRVP18_trench_6_60cm_scaffold_49480
Species: Methanomethylovorans hollandica (60%)
5 4958 bp 38.42 5.08 90.34
SRVP18_trench_6_60cm_scaffold_85724 2 1305 bp 42.15 6.32 90.34
SRVP18_trench_6_60cm_scaffold_27847 5 3183 bp 42.04 7.21 90.39
SRVP18_trench_6_60cm_scaffold_20526
Species: Candidatus Methanoperedens nitroreducens (57.14%)
7 3966 bp 42.64 5.64 90.44
SRVP18_trench_6_60cm_scaffold_27573 5 4273 bp 38.45 5.48 90.50
SRVP18_trench_6_60cm_scaffold_10553 6 4962 bp 44.10 6.59 90.63
SRVP18_trench_6_60cm_scaffold_10981 9 4844 bp 43.97 6.01 90.79
SRVP18_trench_6_60cm_scaffold_13311 4 4310 bp 41.81 5.32 90.84
SRVP18_trench_6_60cm_scaffold_20181 4 6133 bp 41.02 5.28 90.84
SRVP18_trench_6_60cm_scaffold_46152 4 3117 bp 37.09 6.83 90.86
SRVP18_trench_6_60cm_scaffold_16173 8 5666 bp 39.78 5.16 90.91
SRVP18_trench_6_60cm_scaffold_12674 6 4434 bp 40.55 5.75 90.93
SRVP18_trench_6_60cm_scaffold_25434 6 2849 bp 42.86 5.69 90.98
SRVP18_trench_6_60cm_scaffold_5161 21 13867 bp 41.28 6.10 91.08
SRVP18_trench_6_60cm_scaffold_20616 5 4301 bp 45.64 5.41 91.10
SRVP18_trench_6_60cm_scaffold_10339 7 5575 bp 41.24 5.97 91.16
SRVP18_trench_6_60cm_scaffold_15425 8 3920 bp 43.83 5.85 91.22
SRVP18_trench_6_60cm_scaffold_14384 9 4098 bp 42.95 6.41 91.29
SRVP18_trench_6_60cm_scaffold_39542 3 2143 bp 42.65 5.04 91.41
Displaying items 201-250 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.