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SRVP18_trench_6_60cm_Methanoperedens_41_6

SRVP18_trench_6_60cm_unknown_41_6
In projects: SRVP18_trench_6_60cm  |  MpSRVP  |  Mp  |  diaphorachaeota  |  archaea_ggkbase  |  borg_methanoperedens_collection_2023  |  mp_ece

Consensus taxonomy:

Metagenomic Context

Parent: SRVP18_trench_6_60cm_UNK

Properties

Avg. coverage: 5.84 Longest contig: 13.87 Kbp Bin length: 1.50 Mbp GC content: 41.37 %
Contigs count: 371 Features count: 2060 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 22 / 55 MC: 3 BSCG 16 / 51 ASCG 31 / 38 MC: 1

Description

MetaBAT_24

Displaying items 201-250 of 371 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SRVP18_trench_6_60cm_scaffold_33539 4 3296 bp 41.29 5.69 86.65
SRVP18_trench_6_60cm_scaffold_64806
Species: Candidatus Omnitrophus sp. SKK-01 (50%)
2 1559 bp 42.46 5.68 99.10
SRVP18_trench_6_60cm_scaffold_14321 7 7739 bp 40.75 5.68 93.93
SRVP18_trench_6_60cm_scaffold_28907 9 4019 bp 38.24 5.67 87.46
SRVP18_trench_6_60cm_scaffold_10997 6 4841 bp 42.18 5.67 88.00
SRVP18_trench_6_60cm_scaffold_11825 6 4633 bp 40.38 5.67 92.92
SRVP18_trench_6_60cm_scaffold_28830 6 3229 bp 45.22 5.67 85.20
SRVP18_trench_6_60cm_scaffold_15546 6 4502 bp 44.34 5.66 82.50
SRVP18_trench_6_60cm_scaffold_36195 4 2652 bp 36.76 5.66 83.82
SRVP18_trench_6_60cm_scaffold_23552 5 5042 bp 42.58 5.65 93.71
SRVP18_trench_6_60cm_scaffold_16073 10 5987 bp 42.59 5.64 79.62
SRVP18_trench_6_60cm_scaffold_23440 3 3005 bp 40.57 5.64 85.86
SRVP18_trench_6_60cm_scaffold_78290 3 1383 bp 42.66 5.64 95.44
SRVP18_trench_6_60cm_scaffold_24426 7 2923 bp 44.27 5.64 93.12
SRVP18_trench_6_60cm_scaffold_11352 12 9205 bp 39.68 5.64 77.53
SRVP18_trench_6_60cm_scaffold_20526
Species: Candidatus Methanoperedens nitroreducens (57.14%)
7 3966 bp 42.64 5.64 90.44
SRVP18_trench_6_60cm_scaffold_113661 1 1092 bp 41.30 5.63 97.53
SRVP18_trench_6_60cm_scaffold_23351 5 3013 bp 43.28 5.63 73.88
SRVP18_trench_6_60cm_scaffold_59964 3 3064 bp 46.83 5.63 84.20
SRVP18_trench_6_60cm_scaffold_11378
Species: Methanolobus tindarius (50%)
2 4741 bp 39.87 5.63 95.93
SRVP18_trench_6_60cm_scaffold_14460 5 4084 bp 38.25 5.62 92.34
SRVP18_trench_6_60cm_scaffold_92851 4 2297 bp 42.36 5.62 89.73
SRVP18_trench_6_60cm_scaffold_13849 6 5404 bp 44.34 5.61 84.88
SRVP18_trench_6_60cm_scaffold_66162
Species: Candidatus Methanoperedens nitroreducens (50%)
4 2702 bp 39.30 5.61 80.50
SRVP18_trench_6_60cm_scaffold_131620 3 1339 bp 41.15 5.60 87.60
SRVP18_trench_6_60cm_scaffold_18354
Species: Candidatus Methanoperedens nitroreducens (75%)
4 3511 bp 42.92 5.60 89.89
SRVP18_trench_6_60cm_scaffold_44726 5 3248 bp 34.91 5.59 77.77
SRVP18_trench_6_60cm_scaffold_18772 6 4480 bp 36.36 5.59 94.35
SRVP18_trench_6_60cm_scaffold_46015
Order: Methanosarcinales (50%)
4 3570 bp 43.50 5.59 80.76
SRVP18_trench_6_60cm_scaffold_10074 8 5101 bp 38.50 5.59 85.40
SRVP18_trench_6_60cm_scaffold_28833
Species: Methanosarcina lacustris (50%)
2 2628 bp 38.43 5.59 98.86
SRVP18_trench_6_60cm_scaffold_8787 8 6743 bp 43.11 5.58 97.52
SRVP18_trench_6_60cm_scaffold_14063 3 4164 bp 42.94 5.58 89.05
SRVP18_trench_6_60cm_scaffold_73911
Class: Methanomicrobia (50%)
6 2692 bp 40.86 5.57 79.46
SRVP18_trench_6_60cm_scaffold_17723 3 3591 bp 42.13 5.56 88.97
SRVP18_trench_6_60cm_scaffold_26015 5 2808 bp 37.68 5.56 74.36
SRVP18_trench_6_60cm_scaffold_23145 5 4001 bp 41.16 5.55 92.98
SRVP18_trench_6_60cm_scaffold_17706 4 3592 bp 45.04 5.55 91.54
SRVP18_trench_6_60cm_scaffold_64181
Order: Methanosarcinales (60%)
5 3110 bp 42.54 5.55 88.46
SRVP18_trench_6_60cm_scaffold_39765
Species: BJP_08E140C01_10KDA_Methanosarcinales_43_67 (50%)
2 2135 bp 42.20 5.55 78.13
SRVP18_trench_6_60cm_scaffold_15054 7 3979 bp 44.43 5.54 95.22
SRVP18_trench_6_60cm_scaffold_53498
Domain: Archaea (50%)
4 1764 bp 42.23 5.53 94.05
SRVP18_trench_6_60cm_scaffold_51930 5 2524 bp 39.86 5.53 86.65
SRVP18_trench_6_60cm_scaffold_20415 4 3282 bp 42.08 5.53 96.62
SRVP18_trench_6_60cm_scaffold_15692
Domain: Archaea (60%)
5 4531 bp 41.56 5.53 84.62
SRVP18_trench_6_60cm_scaffold_25361 3 2855 bp 37.90 5.52 87.22
SRVP18_trench_6_60cm_scaffold_9114 9 5438 bp 41.87 5.52 93.45
SRVP18_trench_6_60cm_scaffold_18193 5 3530 bp 35.38 5.48 96.54
SRVP18_trench_6_60cm_scaffold_27573 5 4273 bp 38.45 5.48 90.50
SRVP18_trench_6_60cm_scaffold_4249 11 8637 bp 36.85 5.47 75.86
Displaying items 201-250 of 371 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.