ggKbase home page

NECEvent2014_10_1_scaffold_1_311

Organism: NECEvent2014_10_1_Escherichia_coli_52_196

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 2
Location: comp(343136..343360)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock-like protein CspD n=1412 Tax=Enterobacteriaceae RepID=CSPD_ECO57 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 74.0
  • Bit_score: 158
  • Evalue 3.60e-36
cspD; stationary phase/starvation inducible regulatory protein CspD similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 74.0
  • Bit_score: 158
  • Evalue 1.00e-36
Cold shock domain protein CspD {ECO:0000313|EMBL:EHU47514.1}; TaxID=868141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escheri similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 74.0
  • Bit_score: 158
  • Evalue 5.00e-36

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 225
ATGGAAAAGGGTACTGTTAAGTGGTTCAACAATGCCAAAGGGTTTGGTTTCATCTGCCCTGAAGGCGGCGGCGAAGATATTTTCGCTCATTATTCCACCATTCAGATGGATGGTTACAGAACGCTAAAAGCTGGACAATCCGTTCAGTTTGATGTCCACCAGGGGCCAAAAGGCAATCACGCCAGTGTTATTGTGCCCGTCGAAGTAGAAGCGGCAGTCGCATAG
PROTEIN sequence
Length: 75
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA*