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NECEvent2014_1_4_UNK

In projects: NECEvent2014_1_4
Displaying 31 items
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_1_4_scaffold_549 1012A0613_scaffold_549 0 1625 bp 53.72 4423.11 0.00
NECEvent2014_1_4_scaffold_443 1012A0613_scaffold_443 1 2046 bp 50.00 10.04 3.57
NECEvent2014_1_4_scaffold_613 1012A0613_scaffold_613 1 1378 bp 46.30 21.66 5.30
NECEvent2014_1_4_scaffold_274 1012A0613_scaffold_274
Species: Veillonella dispar (100%)
1 3221 bp 49.80 20.86 6.71
NECEvent2014_1_4_scaffold_512 1012A0613_scaffold_512
Species: Enterobacter cloacae (100%)
1 1797 bp 44.18 1726.38 12.69
NECEvent2014_1_4_scaffold_604 1012A0613_scaffold_604
Species: Enterococcus faecalis (66.67%)
3 1416 bp 36.37 7.20 55.30
NECEvent2014_1_4_scaffold_405 1012A0613_scaffold_405
Phylum: Firmicutes (66.67%)
3 2199 bp 29.38 6.21 65.35
NECEvent2014_1_4_scaffold_168 1012A0613_scaffold_168
Order: Clostridiales (50%)
4 4409 bp 36.77 5.38 69.68
NECEvent2014_1_4_scaffold_620 1012A0613_scaffold_620
Species: Veillonella dispar (100%)
1 1350 bp 37.48 16.44 69.78
NECEvent2014_1_4_scaffold_208 1012A0613_scaffold_208
Species: Veillonella sp. DORA_B_18_19_23 (100%)
3 3875 bp 28.85 6.31 71.77
NECEvent2014_1_4_scaffold_373 1012A0613_scaffold_373
Species: Veillonella sp. DORA_A_3_16_22 (50%)
4 2474 bp 29.75 4.67 72.51
NECEvent2014_1_4_scaffold_572 1012A0613_scaffold_572
Species: Enterococcus faecalis (100%)
2 1529 bp 35.97 7.95 75.15
NECEvent2014_1_4_scaffold_658 1012A0613_scaffold_658
Species: Veillonella dispar (100%)
2 1231 bp 29.49 6.46 78.47
NECEvent2014_1_4_scaffold_334 1012A0613_scaffold_334
Domain: Bacteria (85.71%)
7 2798 bp 29.16 4.93 79.24
NECEvent2014_1_4_scaffold_645 1012A0613_scaffold_645
Species: Veillonella sp. DORA_A_3_16_22 (50%)
2 1257 bp 27.84 5.85 79.47
NECEvent2014_1_4_scaffold_454 1012A0613_scaffold_454
Genus: Veillonella (50%)
6 2007 bp 28.35 5.75 80.57
NECEvent2014_1_4_scaffold_180 1012A0613_scaffold_180
Class: Bacilli (60%)
5 4158 bp 38.26 5.05 80.74
NECEvent2014_1_4_scaffold_476 1012A0613_scaffold_476
Phylum: Firmicutes (66.67%)
3 1924 bp 38.83 8.89 83.58
NECEvent2014_1_4_scaffold_439 1012A0613_scaffold_439
Species: Enterococcus faecalis (60%)
5 2059 bp 38.85 4.44 84.51
NECEvent2014_1_4_scaffold_622 1012A0613_scaffold_622
Phylum: Firmicutes (100%)
3 1342 bp 29.14 4.92 86.51
NECEvent2014_1_4_scaffold_694 1012A0613_scaffold_694
Species: Klebsiella oxytoca (100%)
1 1111 bp 53.47 2.70 87.22
NECEvent2014_1_4_scaffold_143 1012A0613_scaffold_143
Domain: Bacteria (100%)
5 4980 bp 35.16 5.87 87.53
NECEvent2014_1_4_scaffold_505 1012A0613_scaffold_505
Species: Streptococcus pneumoniae (50%)
6 1816 bp 34.91 4.63 90.69
NECEvent2014_1_4_scaffold_113 1012A0613_scaffold_113
Phylum: Firmicutes (60%)
5 6335 bp 35.01 5.02 90.83
NECEvent2014_1_4_scaffold_228 1012A0613_scaffold_228
Species: Oribacterium sp. oral taxon 108 (50%)
2 3608 bp 40.33 4.37 92.38
NECEvent2014_1_4_scaffold_698 1012A0613_scaffold_698
Species: Thelohanellus kitauei (50%)
2 1105 bp 34.93 2.17 95.84
NECEvent2014_1_4_scaffold_280 1012A0613_scaffold_280
Species: Fusobacterium varium (100%)
1 3155 bp 31.13 5.13 96.61
NECEvent2014_1_4_scaffold_738 1012A0613_scaffold_738
Domain: Bacteria (66.67%)
3 1020 bp 40.78 6.32 96.76
NECEvent2014_1_4_scaffold_727 1012A0613_scaffold_727
Species: Veillonella sp. DORA_A_3_16_22 (100%)
1 1053 bp 46.34 8.26 98.01
NECEvent2014_1_4_scaffold_258 1012A0613_scaffold_258
Species: Veillonella sp. DORA_A_3_16_22 (100%)
3 3330 bp 45.86 7.03 98.11
NECEvent2014_1_4_scaffold_720 1012A0613_scaffold_720
Species: Clostridium sp. CAG:7 (100%)
1 1070 bp 26.73 3.36 99.81
Displaying 31 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.