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NECEvent2014_2_2_Actinomyces_HPA0247-rel_65_243_partial

NECEvent2014_2_2_Actinomyces_sp__HPA0247_65_260
In projects: NECEvent2014_2_2

Consensus taxonomy: Actinomyces sp. HPA0247  →  Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

gyrA is same as in 172_003

Displaying items 1-50 of 244 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_2_2_scaffold_1812 172_002_scaffold_1812
Genus: Actinomyces (66.67%)
3 1432 bp 57.68 10.68 91.76
NECEvent2014_2_2_scaffold_2180 172_002_scaffold_2180
Species: Actinomyces sp. ICM39 (50%)
2 1208 bp 70.86 30.30 93.13
NECEvent2014_2_2_scaffold_1014 172_002_scaffold_1014
Species: Actinomyces sp. ICM39 (100%)
1 2659 bp 61.30 39.32 99.96
NECEvent2014_2_2_scaffold_2088 172_002_scaffold_2088
Species: Actinomyces sp. HPA0247 (100%)
2 1247 bp 60.47 39.33 76.26
NECEvent2014_2_2_scaffold_994 172_002_scaffold_994
Genus: Actinomyces (100%)
3 2732 bp 66.47 39.64 95.31
NECEvent2014_2_2_scaffold_1549 172_002_scaffold_1549
Species: Actinomyces sp. HPA0247 (100%)
1 1669 bp 65.79 39.72 99.94
NECEvent2014_2_2_scaffold_2388 172_002_scaffold_2388
Species: Actinomyces sp. HPA0247 (100%)
1 1107 bp 72.18 40.11 99.73
NECEvent2014_2_2_scaffold_1257 172_002_scaffold_1257
Species: Actinomyces sp. HPA0247 (100%)
2 2075 bp 65.73 42.43 82.99
NECEvent2014_2_2_scaffold_1407 172_002_scaffold_1407
Species: Actinomyces sp. HPA0247 (100%)
2 1829 bp 66.87 43.63 85.46
NECEvent2014_2_2_scaffold_1122 172_002_scaffold_1122
Species: Actinomyces sp. ICM39 (50%)
2 2373 bp 62.20 44.69 96.71
NECEvent2014_2_2_scaffold_1187 172_002_scaffold_1187
Species: Actinomyces sp. HPA0247 (66.67%)
3 2219 bp 61.96 45.02 101.40
NECEvent2014_2_2_scaffold_2306 172_002_scaffold_2306
Species: Actinomyces sp. HPA0247 (50%)
2 1145 bp 66.64 45.33 100.35
NECEvent2014_2_2_scaffold_1108 172_002_scaffold_1108
Species: Actinomyces sp. HPA0247 (100%)
3 2412 bp 69.94 46.70 99.63
NECEvent2014_2_2_scaffold_572 172_002_scaffold_572
Species: Actinomyces sp. HPA0247 (60%)
5 5746 bp 58.27 47.51 93.09
NECEvent2014_2_2_scaffold_1986 172_002_scaffold_1986
Species: Actinomyces sp. HPA0247 (100%)
1 1303 bp 66.31 48.23 99.92
NECEvent2014_2_2_scaffold_1125 172_002_scaffold_1125
Species: Actinomyces odontolyticus (50%)
2 2364 bp 71.32 49.30 100.25
NECEvent2014_2_2_scaffold_1713 172_002_scaffold_1713
Species: Actinomyces sp. HPA0247 (66.67%)
3 1513 bp 67.94 51.35 80.70
NECEvent2014_2_2_scaffold_1673 172_002_scaffold_1673
Species: Actinomyces sp. HPA0247 (50%)
2 1547 bp 66.06 51.49 99.87
NECEvent2014_2_2_scaffold_1268 172_002_scaffold_1268
Genus: Actinomyces (60%)
5 2057 bp 62.32 52.36 93.34
NECEvent2014_2_2_scaffold_1298 172_002_scaffold_1298
Species: Actinomyces sp. ICM54 (100%)
2 2002 bp 65.78 53.42 70.43
NECEvent2014_2_2_scaffold_2031 172_002_scaffold_2031
Species: Actinomyces sp. HPA0247 (100%)
1 1279 bp 61.45 53.60 99.92
NECEvent2014_2_2_scaffold_1764 172_002_scaffold_1764
Species: Actinomyces sp. HPA0247 (100%)
1 1474 bp 69.40 54.55 91.79
NECEvent2014_2_2_scaffold_1972 172_002_scaffold_1972
Species: Actinomyces sp. HPA0247 (50%)
2 1311 bp 68.04 54.58 63.69
NECEvent2014_2_2_scaffold_781 172_002_scaffold_781
Genus: Actinomyces (75%)
4 3728 bp 63.98 54.76 88.68
NECEvent2014_2_2_scaffold_2500 172_002_scaffold_2500
Species: Actinomyces sp. ICM39 (50%)
2 1065 bp 70.99 61.55 100.28
NECEvent2014_2_2_scaffold_1213 172_002_scaffold_1213
Species: Actinomyces sp. HPA0247 (66.67%)
3 2158 bp 69.79 61.65 89.39
NECEvent2014_2_2_scaffold_1719 172_002_scaffold_1719
Species: Actinomyces sp. HPA0247 (100%)
2 1507 bp 70.34 62.11 88.59
NECEvent2014_2_2_scaffold_2241 172_002_scaffold_2241
Species: Actinomyces sp. HPA0247 (50%)
2 1176 bp 61.14 62.24 84.69
NECEvent2014_2_2_scaffold_1551 172_002_scaffold_1551
Species: Actinomyces sp. HPA0247 (50%)
2 1666 bp 66.93 62.76 95.44
NECEvent2014_2_2_scaffold_1909 172_002_scaffold_1909
Genus: Actinomyces (66.67%)
3 1358 bp 65.54 63.73 86.38
NECEvent2014_2_2_scaffold_2627 172_002_scaffold_2627
Species: Actinomyces sp. HPA0247 (100%)
1 1027 bp 68.74 70.25 93.77
NECEvent2014_2_2_scaffold_2261 172_002_scaffold_2261
Species: Actinomyces sp. HPA0247 (100%)
2 1164 bp 68.90 72.42 99.48
NECEvent2014_2_2_scaffold_1794 172_002_scaffold_1794
Species: Actinomyces sp. HPA0247 (100%)
2 1448 bp 60.77 73.14 45.99
NECEvent2014_2_2_scaffold_1557 172_002_scaffold_1557
Species: Atopobium sp. ICM58 (100%)
1 1663 bp 72.10 73.15 99.94
NECEvent2014_2_2_scaffold_2003 172_002_scaffold_2003
Species: Actinomyces sp. HPA0247 (50%)
2 1295 bp 60.15 73.55 63.94
NECEvent2014_2_2_scaffold_2662 172_002_scaffold_2662
Species: Actinomyces sp. HPA0247 (100%)
2 1014 bp 63.31 79.73 100.30
NECEvent2014_2_2_scaffold_2667 172_002_scaffold_2667
Species: Actinomyces sp. HPA0247 (100%)
1 1012 bp 66.50 102.87 99.90
NECEvent2014_2_2_scaffold_2602 172_002_scaffold_2602
Species: Actinomyces sp. HPA0247 (100%)
2 1032 bp 70.74 127.91 89.53
NECEvent2014_2_2_scaffold_1262 172_002_scaffold_1262
Species: Actinomyces sp. HPA0247 (100%)
3 2067 bp 60.76 158.78 93.18
NECEvent2014_2_2_scaffold_2319 172_002_scaffold_2319
Species: Microlunatus phosphovorus (50%)
2 1140 bp 53.60 160.00 55.26
NECEvent2014_2_2_scaffold_1777 172_002_scaffold_1777
Species: Actinomyces sp. oral taxon 172 (50%)
2 1464 bp 65.92 195.59 92.01
NECEvent2014_2_2_scaffold_2400 172_002_scaffold_2400
Species: Actinomyces sp. HPA0247 (100%)
1 1102 bp 62.16 203.49 93.65
NECEvent2014_2_2_scaffold_1854 172_002_scaffold_1854
Species: Actinomyces odontolyticus (50%)
2 1403 bp 63.72 203.99 80.40
NECEvent2014_2_2_scaffold_990 172_002_scaffold_990
Species: Actinomyces sp. HPA0247 (50%)
4 2736 bp 64.95 210.69 86.73
NECEvent2014_2_2_scaffold_1266 172_002_scaffold_1266
Species: Actinomyces sp. HPA0247 (100%)
2 2062 bp 68.43 213.43 95.44
NECEvent2014_2_2_scaffold_2584 172_002_scaffold_2584
Species: Actinomyces sp. HPA0247 (100%)
1 1036 bp 72.39 215.59 99.90
NECEvent2014_2_2_scaffold_991 172_002_scaffold_991
Species: Actinomyces sp. HPA0247 (66.67%)
3 2736 bp 72.40 219.24 98.46
NECEvent2014_2_2_scaffold_740 172_002_scaffold_740
Species: Actinomyces sp. HPA0247 (100%)
1 3937 bp 66.19 222.73 92.35
NECEvent2014_2_2_scaffold_1032 172_002_scaffold_1032
Species: Actinomyces sp. ICM39 (50%)
2 2600 bp 68.65 224.42 91.38
NECEvent2014_2_2_scaffold_1301 172_002_scaffold_1301
Species: Actinomyces sp. HPA0247 (100%)
1 1996 bp 69.19 225.23 99.95
Displaying items 1-50 of 244 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.