ggKbase home page

NECEvent2014_2_8_UNK

In projects: NECEvent2014_2_8
Displaying items 51-100 of 129 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_2_8_scaffold_4056 172_008_scaffold_4056
Species: Peptoclostridium difficile (100%)
1 1033 bp 37.08 7.55 99.90
NECEvent2014_2_8_scaffold_1215 172_008_scaffold_1215
Species: [Clostridium] spiroforme (50%)
2 2359 bp 23.10 7.50 91.82
NECEvent2014_2_8_scaffold_502 172_008_scaffold_502
Species: human gut metagenome (50%)
6 4765 bp 31.02 7.30 91.84
NECEvent2014_2_8_scaffold_2117 172_008_scaffold_2117
Species: Peptoclostridium difficile (100%)
1 1604 bp 36.53 6.92 97.26
NECEvent2014_2_8_scaffold_2696 172_008_scaffold_2696
Species: Peptoclostridium difficile (100%)
1 1370 bp 36.28 6.79 97.88
NECEvent2014_2_8_scaffold_3728 172_008_scaffold_3728
Species: Coprobacillus sp. 29_1 (100%)
1 1096 bp 46.08 6.71 93.89
NECEvent2014_2_8_scaffold_3125 172_008_scaffold_3125
Species: Enterococcus faecalis (100%)
1 1243 bp 45.70 6.64 89.78
NECEvent2014_2_8_scaffold_1119 172_008_scaffold_1119
Species: Staphylococcus sp. DORA_6_22 (50%)
2 2497 bp 26.83 6.31 58.39
NECEvent2014_2_8_scaffold_2040 172_008_scaffold_2040
Phylum: Firmicutes (60%)
5 1647 bp 42.99 5.83 67.58
NECEvent2014_2_8_scaffold_959 172_008_scaffold_959
Order: Clostridiales (80%)
5 2789 bp 41.27 5.65 80.03
NECEvent2014_2_8_scaffold_778 172_008_scaffold_778
Genus: Staphylococcus (50%)
4 3295 bp 25.71 5.51 67.65
NECEvent2014_2_8_scaffold_374 172_008_scaffold_374
Species: Peptoclostridium difficile (100%)
9 5995 bp 36.08 5.50 79.22
NECEvent2014_2_8_scaffold_1720 172_008_scaffold_1720
Species: Peptoclostridium difficile (100%)
1 1840 bp 22.34 5.38 64.08
NECEvent2014_2_8_scaffold_409 172_008_scaffold_409
Species: Peptoclostridium difficile (81.82%)
11 5540 bp 29.57 5.33 85.29
NECEvent2014_2_8_scaffold_3836 172_008_scaffold_3836
Species: Eggerthella sp. HGA1 (100%)
2 1077 bp 54.78 5.29 84.96
NECEvent2014_2_8_scaffold_986 172_008_scaffold_986
Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)
2 2728 bp 45.67 5.28 99.74
NECEvent2014_2_8_scaffold_984 172_008_scaffold_984
Order: Eggerthellales (60%)
5 2731 bp 53.97 5.22 79.97
NECEvent2014_2_8_scaffold_3478 172_008_scaffold_3478 1 1155 bp 51.08 5.19 15.84
NECEvent2014_2_8_scaffold_3689 172_008_scaffold_3689 0 1105 bp 29.41 5.02 0.00
NECEvent2014_2_8_scaffold_3180 172_008_scaffold_3180
Species: Peptoclostridium difficile (100%)
1 1230 bp 21.95 5.00 72.44
NECEvent2014_2_8_scaffold_3887 172_008_scaffold_3887 4 1069 bp 39.57 4.91 81.95
NECEvent2014_2_8_scaffold_1925 172_008_scaffold_1925
Species: Adlercreutzia equolifaciens (100%)
1 1710 bp 51.52 4.91 96.49
NECEvent2014_2_8_scaffold_1367 172_008_scaffold_1367
Species: Peptoclostridium difficile (100%)
4 2155 bp 36.61 4.73 98.98
NECEvent2014_2_8_scaffold_1707 172_008_scaffold_1707 6 1848 bp 56.49 4.46 81.17
NECEvent2014_2_8_scaffold_1234 172_008_scaffold_1234
Species: Staphylococcus sp. DORA_6_22 (100%)
3 2327 bp 25.31 4.45 63.94
NECEvent2014_2_8_scaffold_3821 172_008_scaffold_3821
Order: Eggerthellales (66.67%)
3 1079 bp 55.51 4.45 62.28
NECEvent2014_2_8_scaffold_4235 172_008_scaffold_4235
Species: Staphylococcus epidermidis (100%)
1 1001 bp 31.57 4.35 99.80
NECEvent2014_2_8_scaffold_2283 172_008_scaffold_2283
Species: Hungatella hathewayi (100%)
1 1529 bp 49.12 4.32 96.53
NECEvent2014_2_8_scaffold_2643 172_008_scaffold_2643
Species: Eggerthella sp. HGA1 (66.67%)
3 1393 bp 58.00 4.31 89.59
NECEvent2014_2_8_scaffold_1415 172_008_scaffold_1415
Genus: Eggerthella (66.67%)
3 2104 bp 48.91 4.28 94.39
NECEvent2014_2_8_scaffold_4181 172_008_scaffold_4181 1 1009 bp 22.79 4.16 5.95
NECEvent2014_2_8_scaffold_1558 172_008_scaffold_1558
Phylum: Firmicutes (66.67%)
3 1966 bp 46.59 4.12 89.42
NECEvent2014_2_8_scaffold_3442 172_008_scaffold_3442
Species: human gut metagenome (50%)
2 1167 bp 49.44 4.11 71.72
NECEvent2014_2_8_scaffold_4098 172_008_scaffold_4098 4 1024 bp 38.28 4.10 91.80
NECEvent2014_2_8_scaffold_3112 172_008_scaffold_3112
Species: Eggerthella lenta (100%)
2 1246 bp 54.74 4.09 72.71
NECEvent2014_2_8_scaffold_1715 172_008_scaffold_1715
Species: Blautia sp. KLE 1732 (100%)
2 1844 bp 44.36 4.07 99.40
NECEvent2014_2_8_scaffold_2411 172_008_scaffold_2411
Species: Peptoclostridium difficile (100%)
1 1478 bp 22.19 4.06 76.73
NECEvent2014_2_8_scaffold_2826 172_008_scaffold_2826
Species: Eggerthella sp. HGA1 (100%)
2 1334 bp 55.02 4.05 98.50
NECEvent2014_2_8_scaffold_3320 172_008_scaffold_3320 1 1195 bp 46.11 4.02 39.92
NECEvent2014_2_8_scaffold_2185 172_008_scaffold_2185
Species: Tyzzerella nexilis (50%)
2 1573 bp 41.26 4.01 65.80
NECEvent2014_2_8_scaffold_2644 172_008_scaffold_2644 4 1393 bp 54.77 3.98 92.82
NECEvent2014_2_8_scaffold_2594 172_008_scaffold_2594
Species: Peptoclostridium difficile (100%)
3 1414 bp 25.53 3.93 78.50
NECEvent2014_2_8_scaffold_2384 172_008_scaffold_2384
Species: Eggerthella sp. HGA1 (100%)
1 1492 bp 50.87 3.92 34.79
NECEvent2014_2_8_scaffold_651 172_008_scaffold_651
Phylum: Actinobacteria (50%)
4 3780 bp 50.53 3.89 95.79
NECEvent2014_2_8_scaffold_3457 172_008_scaffold_3457
Domain: Bacteria (100%)
3 1160 bp 55.00 3.88 87.41
NECEvent2014_2_8_scaffold_606 172_008_scaffold_606
Order: Clostridiales (80%)
5 4053 bp 44.81 3.85 96.74
NECEvent2014_2_8_scaffold_1009 172_008_scaffold_1009
Species: Megasphaera elsdenii CAG:570 (50%)
4 2663 bp 30.57 3.83 102.63
NECEvent2014_2_8_scaffold_817 172_008_scaffold_817
Genus: Lachnoclostridium (66.67%)
3 3130 bp 51.60 3.83 93.35
NECEvent2014_2_8_scaffold_875 172_008_scaffold_875
Species: Enterococcus faecalis (100%)
1 2982 bp 47.25 3.72 100.00
NECEvent2014_2_8_scaffold_1566 172_008_scaffold_1566
Species: Eggerthella lenta (66.67%)
3 1962 bp 56.98 3.67 80.58
Displaying items 51-100 of 129 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.