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NECEvent2014_2_8_scaffold_232_1

Organism: NECEvent2014_2_8_Peptoclostridium_difficile_29_5

near complete RP 45 / 55 MC: 1 BSCG 47 / 51 ASCG 12 / 38 MC: 3
Location: 115..3831

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2450
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2450
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=167 Tax=Clostridium difficile RepID=RPOB_CLOD6 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2450
  • Evalue 0.0
  • rbh

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Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3717
ATGCCACATCCTGTCACGATAGGTAAAAGAACTAGAATGAGCTTTTCTAAAATTAAGGAAATAGCTGATGTGCCAAATCTTATAGAAATTCAAGTAGATTCCTATGAGTGGTTTTTAAAAGAAGGTTTAAAAGAAGTGTTTGATGATATTTCACCAATAGAAGATTATACTGGTAATCTTATATTGGAATTTGTCGACTATTCTCTAGATGATAAACCAAAGTACGATATAGAAGAGTGTAAAGAGAGAGATGCTACATATTGTGCACCTCTAAAGGTTAAGGTAAGACTTATAAATAAAGAAACAGGTGAGATAAAAGAACAAGAAGTGTTTATGGGTGACTTCCCTTTAATGACAGAAAGAGGAACTTTCGTTATAAATGGAGCAGAAAGAGTTATAGTAAGTCAATTAGTTAGATCTCCTGGTGTTTACTATGCGGAAGAAAGAGATAAAACAGGTAAGAGATTGATTTCATCTACTGTAATTCCTAATAGAGGAGCATGGTTAGAATATGAAACAGATTCTAATGATGTAATATCTGTAAGAGTTGATAGAACAAGAAAACAACCAGTTACAGTTTTACTTAGAGCTTTAGGAATAGGAACAGATGCAGAGATAATTGACCTTTTAGGAGAAGATGAGAGATTATCTGCTACATTAGAAAAAGATAATACTAAGACAGTAGAAGAAGGTCTTGTAGAGATATACAAAAAATTAAGACCAGGTGAACCTCCTACTGTAGAAAGTGCATCATCTTTATTAAATGCTTTATTCTTTGACCCAAAAAGATATGACCTAGCAAAAGTTGGTAGATATAAATTCAATAAGAAACTTGCTTTATGTTATAGAATAATGAATAAAATTTCAGCAGAAGACATAATAAATCCAGAAACTGGAGAAGTATTTGTAAAAGCTGGAGAAAAAATAAGCTATGATTTGGCTAAAGCCATACAAAATGCAGGTATAAATGTAGTAAATCTACTAATGGATGATGATAAAAAAGTTAGAGTTATAGGAAATAATTTTGTGGATATTAAGTCTCACATTGATTTTGACATAGATGATTTAAACATAAAAGAAAAAGTACATTATCCAACTTTAAAAGAAATTTTAGATGGATATAGTGATGAAGAAGAAATAAAAGAGGCTATAAAATCAAGAATTAAAGAACTTATACCAAAACATATATTATTAGATGATATAATAGCTTCAATAAGTTATGAGTTCAATATATTCTATAATATAGGAAATATTGATGATATAGATCACCTAGGAAACAGAAGAATAAGATCTGTAGGTGAATTGTTACAAAATCAAGTTAGAATTGGTCTTTCAAGAATGGAAAGAGTTATAAAAGAAAGAATGACGGTTCAAGATATGGAAGCTATAACGCCTCAAGCGTTAGTTAACATAAGACCAGTTTCAGCTGCAATAAAAGAATTTTTTGGTAGTTCTCAGTTATCTCAGTTCATGGATCAAACAAATCCTCTATCTGAGTTAACGCATAAGAGAAGATTATCAGCCCTTGGGCCTGGAGGTCTTTCAAGAGAAAGAGCTGGATTCGAAGTGCGTGACGTTCACCATTCACACTATGGTAGAATGTGTCCAATAGAGACTCCAGAGGGACCAAATATCGGTCTTATAAACTCTCTAGGAACTTATGCAAAAATAAATGAATTTGGATTTATAGAATCACCATATAGAAAATTTGATAAAGAAACATCAACAGTTACTGATGAAATACATTATTTAACTGCTGACGAAGAAGATTTATTCGTAAGAGCTCAGGCAAATGAGCCATTAACAGAAGATGGTAAATTCGTAAACCATAGAGTTGTTTGTAGAACTGTAAATGGTGCTGTTGAAATGGTTCCTGAAAGTAGAGTAGATTACATGGATATATCTCCTAAGCAGGTTGTATCTGTTGCCACTGCTATGATACCTTTCTTAGAAAATGATGATGCCAACCGTGCCCTTATGGGAGCGAACATGCAGCGTCAGGCAGTGCCTCTAGTTAGAAGAGAAGCACCAATTATAGGAACTGGTATAGAATACAGAGCAGCAAAAGACTCTGGAGCAGTTGTTGTTGCTAGAAATTCTGGTATAGCAGAAAGAGTAACAGCAGATGAAATAATTATAAAAAGAGAAGATGGAAACAGAGATAGATATAATCTACTTAAGTTTAAACGTTCAAACTCAGGTACTTGTATAAATCAAACACCTATAATAAATAAGGGTGACCAGATAATAAAAGGTGATGTTATAGCAGATGGTCCAGCAACTGATTTAGGAGAAGTTGCACTTGGAAGAAACTGTCTTATAGCATTCATGACTTGGGAAGGTTATAACTACGAGGATGCTATATTAATAAATGAAAGATTAGTTAAAGAAGATAGATTATCAACAATTCATATAGAAGAATATGAATGTGAAGCTAGAGATACAAAACTAGGGCCAGAGGAAATAACTAGAGATATACCTAATGTTGGAGATAGTGCAATTAAGAACTTAGATGACAGAGGTATAATAAGAATAGGTGCAGAAGTAGACTCAGGTGATATATTAGTTGGTAAAGTAACTCCAAAAGGAGAAACTGAACTTACTGCTGAGGAAAGATTACTTCGTGCAATATTTGGAGAAAAGGCTAGAGAAGTTAGAGATACTTCACTTAAAGTGCCTCATGGTGAATCTGGTATAATAGTTGATGTAAAAGTATTTACTAGAGAAAATGGAGATGATTTATCTCCAGGAGTAAATGAATTAGTAAGATGCTATATAGCTAAAAAGAGAAAAATAAAAGTTGGAGATAAAATGGCTGGTCGTCATGGTAATAAAGGGGTTATCTCAAGAGTATTACCTGAAGAAGATATGCCATTCATGGAAAATGGAACACCACTAGACATAATACTTAACCCACAAGGTATACCATCACGTATGAACATTGGTCAGGTTTTAGAAGTTCATTTAGGACTTGCTGCTAAGACATTAGGATGGTATGTAGCAACATCAGTATTCGATGGTGCTAATGAGTATGACATAATGGATGCTCTTGAAGAAGCTGGGTATCCTAGAGATGGTAAATTAACTTTATATGATGGTAGAACAGGTGAGTCTTTTGACAACAGAATAACTGTTGGATATATGTACTACTTGAAACTACATCACTTAGTAGATGAAAAACTACATGCAAGAAGTACTGGACCATACTCATTAGTTACTCAACAGCCACTAGGTGGTAAAGCACAATTTGGTGGACAAAGATTTGGAGAGATGGAGGTTTGGGCTCTGGAAGCATATGGAGCTGCTCACATACTTCAAGAAATACTTACTGTTAAGTCTGATGACGTTGTAGGTCGTGTTAGAACATATGAAGCTATAGTTAAAGGTGAAAATATACCTGAACCAGGAATCCCAGAATCATTTAAGGTTCTTATAAAAGAACTTCAAAGTTTATGCTTAGATGTAAAAGTATTGACAGATGAAGACCAAGAAATAGAAGTAAGAGAATCTGTGGATGAAGATGATACAATAGGTGAATTTGAGCTAGATGTTGTAAATCATATGGGAGAAGTTGAAGAAAGTAATATAATAGAAGAAATTGAAGATGATTTTGCAGAAAATGCAGAAGATGAGGATATAGAGAATTTAGAAGAATTCACTGAAGATGATTTATTTGAAGAAGAAATAGATTTTGATAGTGATGACTTTGATATGTAA
PROTEIN sequence
Length: 1239
MPHPVTIGKRTRMSFSKIKEIADVPNLIEIQVDSYEWFLKEGLKEVFDDISPIEDYTGNLILEFVDYSLDDKPKYDIEECKERDATYCAPLKVKVRLINKETGEIKEQEVFMGDFPLMTERGTFVINGAERVIVSQLVRSPGVYYAEERDKTGKRLISSTVIPNRGAWLEYETDSNDVISVRVDRTRKQPVTVLLRALGIGTDAEIIDLLGEDERLSATLEKDNTKTVEEGLVEIYKKLRPGEPPTVESASSLLNALFFDPKRYDLAKVGRYKFNKKLALCYRIMNKISAEDIINPETGEVFVKAGEKISYDLAKAIQNAGINVVNLLMDDDKKVRVIGNNFVDIKSHIDFDIDDLNIKEKVHYPTLKEILDGYSDEEEIKEAIKSRIKELIPKHILLDDIIASISYEFNIFYNIGNIDDIDHLGNRRIRSVGELLQNQVRIGLSRMERVIKERMTVQDMEAITPQALVNIRPVSAAIKEFFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLGTYAKINEFGFIESPYRKFDKETSTVTDEIHYLTADEEDLFVRAQANEPLTEDGKFVNHRVVCRTVNGAVEMVPESRVDYMDISPKQVVSVATAMIPFLENDDANRALMGANMQRQAVPLVRREAPIIGTGIEYRAAKDSGAVVVARNSGIAERVTADEIIIKREDGNRDRYNLLKFKRSNSGTCINQTPIINKGDQIIKGDVIADGPATDLGEVALGRNCLIAFMTWEGYNYEDAILINERLVKEDRLSTIHIEEYECEARDTKLGPEEITRDIPNVGDSAIKNLDDRGIIRIGAEVDSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGIIVDVKVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPFMENGTPLDIILNPQGIPSRMNIGQVLEVHLGLAAKTLGWYVATSVFDGANEYDIMDALEEAGYPRDGKLTLYDGRTGESFDNRITVGYMYYLKLHHLVDEKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHILQEILTVKSDDVVGRVRTYEAIVKGENIPEPGIPESFKVLIKELQSLCLDVKVLTDEDQEIEVRESVDEDDTIGEFELDVVNHMGEVEESNIIEEIEDDFAENAEDEDIENLEEFTEDDLFEEEIDFDSDDFDM*