ggKbase home page

NECEvent2014_2_8_scaffold_423_1

Organism: NECEvent2014_2_8_Peptoclostridium_difficile_29_5

near complete RP 45 / 55 MC: 1 BSCG 47 / 51 ASCG 12 / 38 MC: 3
Location: 34..2982

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 interaction domain protein n=6 Tax=Clostridium difficile RepID=T3IKL3_CLODC similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 982.0
  • Bit_score: 1911
  • Evalue 0.0
  • rbh
Transcription antiterminator {ECO:0000313|EMBL:CKH92784.1}; Transcription antiterminator, PTS operonregulator {ECO:0000313|EMBL:CEJ96542.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clost similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 982.0
  • Bit_score: 1911
  • Evalue 0.0
Transcription antiterminator, PTS operonregulator similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 982.0
  • Bit_score: 1911
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 2949
ATGAGGCAAAGAATAAAAAACTTAATTGAAAATGAAGATAAGAAAAATCCTTTAACAGATGAAGCGATTTCAAGTAGGTTAAATATTCGAAGAGAAGATGTTACCTTTTTGAGAAATGAGTTAAAAATAGAAGATTCAAGACAAAGAAGAAAAGTTGTTTTAATTAAAGCTATAAAAGATATTTTAAAAGAAGAAAAAACTATAAATAAAAATGATATAACAAGAAGATTAAACAGCATTGGGTTTACAGTATCAAGATTTACAGTCATACAATACTTAAAAGAGATTCAAGATTCTGGTGACCTAAAACTTGATAAAGAGAGTGATGATAAAAAAGAAAAAATAATCAATAATAGAGAAAATAAAGATATAGCATTTGATAAACTTATAGGTAGTAGTGGTAGCTTAAGTACAATTATAAAACTAGCCAAAGCAGCAATTCTTTATCCACCTCATGGTCTTCATACTATTATTATGGGGCCAACTGGTGTTGGAAAGAGTGAGTTAGCAGAGTGTATGTATAAATTTGCAGTAGAATCATCCAGATTCCCTAAGAATGCACCATTTATAGTTTTTAATGCAGCAGATTATTCAGAGAATCCACAGCTTTTGCTATCACAGTTATTTGGACACGTTAAAGGTGCTTTTACAGGAGCTGATGAGAACAAAGAAGGATTAGTATCAAAGGCAGATGGAGGAATATTGTTTATAGATGAAATACATAGATTACCTCATGAAGGTCAAGAAATACTATTTCAACTGATTGATAAAGGTATGGTCAGAAAGTTAGGAGAAACAAGACTAACACATAAAATAGATGTAATGATTATTTCAGCAACTTCTGAGCCAATAGATTCTCATTTACTTAATACATTTAAAAGACGTATACCTGTAACAATTGAAATACCAGAATTAGTTGCAAGACCATTAAATGAGAGGTTTGACATTATAAATAATTTCTTCTTAATAGAAGCTCAAAGAATGGGAGCAAACATACATATAAAGTCAGATGTATTAAAAGCTCTTATGCTTTACGATTGTATAGGTAATGTAGGTCAACTTAGAAGTGATATTCAAGTAGCTTGTGCTAGGGGACTATTAAACCAACTTACAAACAAACTAAAAGAAGTAAATATAAGCATATCAGATGTACCTGGATATGTAAAACAAGGTCTTATAAAAATCAGAAATTGTAGAGGCAAAATAGAAAATTATGTAGATGGGGATTTAATTATAGATTCAAATCTTCAAGGTGAGATAGAAAAGAAAAATGAAGATATATATACTTTTCCAGATGAAATATACAAACTTACTGAAAGAAGACATATTGATTTATTGGAACAAGGTTTAGATTTTGATGTTATAAATAGAATCATTGGAGGAGAATTAGAAAGTTGCATTCAAAAATACATAAAACAAGTTAAAAAAGTTTCTATTAGTAACAATCTTCCAGATATAAGTCCAATTGTTGGAAAATATATCGTAGAGCTAACTTATGAAGTAATCAAAATAGCATCACAATACCTAAGTTCACTAGAACCGAATCTACATTTATGTTTAGCAGTTCACCTAAAAGCAGCTTTTGAGAGATTAAAAGAAGGAAAAGTAATATCAAATGCTCATTTGAAAGAAATAATAGGAAATTATCCAGTAGAATATTCTGTAGCAGAAAAGGTAGCTCAATATTTAAAGGAAAGATATAACATAAACTTACCAAAAGAAGAAATAGGTATAATAGCAATATATTTTAAAATGAGTAGTAGAAGAGATATGTCTGAACAAAAAAAGATAGGTGTACTTCTTATGGCTCACGGAAGAGTAGCATCTTCTGTATGTGAGGTTACAAATAAACTATTAGGAATTAATCACGCAAGGTATTTAGATATGCCATTTGAGAAGAAGCCGGAAGAAATGATTGAAGAAGCTACTACAATAATAAAAGATATTGATGAAGGTAGAGGTGTGATTATATTAGTAGATATGGGTTCACTTTCATATTTTGGAGATATTATTTCTGGAAAGACTGGAATTAATATAAGGACAATATCTAGATTTGATACATTGCTTTCTATAGAGGTTATACGAAGAGCAGTTTTACCAGATTTAACAATAGACGAGATAGTTGATGAAGTTAAAGGTATAGAGCCACAAGTAAAAGAAAAGGTTAGTAAATGTAACAATACAAAAGTAGATTTTAGAAAACCTATAATTTTAACATTATGTATTACTGGATTAGGGGGAGCTTGTAAGATAAAAAAAATCTTAGAGGAAAATATTAAAAGTATAACTGAAAAGGTTGATATAGAACCTATAGGTATGATTGAATATCCAAGTCTTGATTTAGAGATAAAACAAATAAGCAATGATAAAAATGTAATTGCCATAGTTGGAACAATTGACCCTCAGATATCAAATATCCCTTTTTTTAGTCTAGTAGACATAAATGATAAAGCGAAGTTAAATCAAATAAATAACCTAATTGATACAAATCAAATTGGTGATACAAATAAAAAATATGAATTATCAGATTTAATACATAAAGAAGATATATTTGTGGATTTACAGGTTAAATCAAAAGAAGAAGTTCTAAAATATATGAGTAAAAAACTTAGAGAGAAAGGTTATGTGACAAAAAATTTCTATAAAAAAGTAGTGGAAAGAGATAACTTATTTCCAACTGAATTATCAGATGAAATAGCAATACCTCACACAGATGGAATAGATGTAATTAGGCCAGCTATAAGTATAGCCATCTTAAAGAAGCCTATTGTGTGGAGTAAAAGTAAAGTAAAAATAATACTTTTATTAGCTGTAGACCAAAAGTGTTTTAATCCATTAAGCACTCTACTCTCATTTATAGAAACAGATGAATTTAAGAAGATAAAAAACATTAAAGATAGAGATTTTATTAGGGAGATGATATTAGATGGAGTCAATGAAAATAATTAG
PROTEIN sequence
Length: 983
MRQRIKNLIENEDKKNPLTDEAISSRLNIRREDVTFLRNELKIEDSRQRRKVVLIKAIKDILKEEKTINKNDITRRLNSIGFTVSRFTVIQYLKEIQDSGDLKLDKESDDKKEKIINNRENKDIAFDKLIGSSGSLSTIIKLAKAAILYPPHGLHTIIMGPTGVGKSELAECMYKFAVESSRFPKNAPFIVFNAADYSENPQLLLSQLFGHVKGAFTGADENKEGLVSKADGGILFIDEIHRLPHEGQEILFQLIDKGMVRKLGETRLTHKIDVMIISATSEPIDSHLLNTFKRRIPVTIEIPELVARPLNERFDIINNFFLIEAQRMGANIHIKSDVLKALMLYDCIGNVGQLRSDIQVACARGLLNQLTNKLKEVNISISDVPGYVKQGLIKIRNCRGKIENYVDGDLIIDSNLQGEIEKKNEDIYTFPDEIYKLTERRHIDLLEQGLDFDVINRIIGGELESCIQKYIKQVKKVSISNNLPDISPIVGKYIVELTYEVIKIASQYLSSLEPNLHLCLAVHLKAAFERLKEGKVISNAHLKEIIGNYPVEYSVAEKVAQYLKERYNINLPKEEIGIIAIYFKMSSRRDMSEQKKIGVLLMAHGRVASSVCEVTNKLLGINHARYLDMPFEKKPEEMIEEATTIIKDIDEGRGVIILVDMGSLSYFGDIISGKTGINIRTISRFDTLLSIEVIRRAVLPDLTIDEIVDEVKGIEPQVKEKVSKCNNTKVDFRKPIILTLCITGLGGACKIKKILEENIKSITEKVDIEPIGMIEYPSLDLEIKQISNDKNVIAIVGTIDPQISNIPFFSLVDINDKAKLNQINNLIDTNQIGDTNKKYELSDLIHKEDIFVDLQVKSKEEVLKYMSKKLREKGYVTKNFYKKVVERDNLFPTELSDEIAIPHTDGIDVIRPAISIAILKKPIVWSKSKVKIILLLAVDQKCFNPLSTLLSFIETDEFKKIKNIKDRDFIREMILDGVNENN*