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NECEvent2014_2_8_Enterococcus_faecium_38_11

NECEvent2014_2_8_Enterococcus_faecium_38_12
In projects: NECEvent2014_2_8

Consensus taxonomy: Enterococcus faecium  →  Enterococcus  →  Lactobacillales  →  Bacilli  →  Firmicutes  →  Bacteria

Description

Enterococcus faecium by recA (taxonomy string issue)

Displaying items 1-50 of 95 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
NECEvent2014_2_8_scaffold_343
172_008_scaffold_343
Species: Clostridium sp. FS41 (66.67%)
3 6579 bp 45.68 6.11 99.68
NECEvent2014_2_8_scaffold_1196
172_008_scaffold_1196
Species: Enterococcus faecalis (50%)
2 2389 bp 43.66 8.29 99.96
NECEvent2014_2_8_scaffold_789
172_008_scaffold_789
Order: Erysipelotrichales (80%)
5 3235 bp 40.71 11.50 92.92
NECEvent2014_2_8_scaffold_814
172_008_scaffold_814
Species: Enterococcus faecium (100%)
4 3147 bp 40.13 10.63 96.00
NECEvent2014_2_8_scaffold_48
172_008_scaffold_48
Species: Enterococcus faecium (100%)
66 68487 bp 39.86 12.46 87.66
NECEvent2014_2_8_scaffold_57
172_008_scaffold_57
Species: Enterococcus faecium (100%)
51 59707 bp 39.68 11.03 92.31
NECEvent2014_2_8_scaffold_269
172_008_scaffold_269
Species: Enterococcus faecium (100%)
8 8766 bp 39.62 13.23 83.74
NECEvent2014_2_8_scaffold_710
172_008_scaffold_710
Order: Erysipelotrichales (60%)
5 3531 bp 39.59 9.13 85.81
NECEvent2014_2_8_scaffold_2716
172_008_scaffold_2716
Species: Enterococcus faecalis (50%)
2 1367 bp 39.58 3.51 87.56
NECEvent2014_2_8_scaffold_222
172_008_scaffold_222
Species: Enterococcus faecium (80%)
15 11548 bp 39.56 10.35 82.64
NECEvent2014_2_8_scaffold_141
172_008_scaffold_141
Species: Enterococcus faecium (100%)
19 21389 bp 39.33 12.17 84.72
NECEvent2014_2_8_scaffold_231
172_008_scaffold_231
Species: Enterococcus faecium (100%)
7 10814 bp 39.29 11.80 92.71
NECEvent2014_2_8_scaffold_34
172_008_scaffold_34
Species: Enterococcus faecium (98.95%)
95 84187 bp 39.27 12.41 87.39
NECEvent2014_2_8_scaffold_77
172_008_scaffold_77
Species: Enterococcus faecium (97.78%)
45 45909 bp 39.04 11.94 85.59
NECEvent2014_2_8_scaffold_177
172_008_scaffold_177
Species: Enterococcus faecium (100%)
15 16033 bp 39.03 11.98 87.20
NECEvent2014_2_8_scaffold_101
172_008_scaffold_101
Species: Enterococcus faecium (96.97%)
33 34233 bp 38.99 11.35 91.28
NECEvent2014_2_8_scaffold_107
172_008_scaffold_107
Species: Enterococcus faecium (100%)
31 32551 bp 38.92 12.10 84.56
NECEvent2014_2_8_scaffold_94
172_008_scaffold_94
Species: Enterococcus faecium (100%)
37 37830 bp 38.88 11.28 81.45
NECEvent2014_2_8_scaffold_126
172_008_scaffold_126
Species: Enterococcus faecium (100%)
25 24873 bp 38.84 11.80 89.53
NECEvent2014_2_8_scaffold_145
172_008_scaffold_145
Species: Enterococcus faecium (100%)
19 21202 bp 38.76 12.30 85.59
NECEvent2014_2_8_scaffold_188
172_008_scaffold_188
Species: Enterococcus faecium (91.67%)
12 14278 bp 38.71 11.92 80.87
NECEvent2014_2_8_scaffold_43
172_008_scaffold_43
Species: Enterococcus faecium (97.44%)
78 77489 bp 38.71 11.64 89.68
NECEvent2014_2_8_scaffold_8
172_008_scaffold_8
Species: Enterococcus faecium (91.1%)
146 158993 bp 38.67 12.28 87.25
NECEvent2014_2_8_scaffold_25
172_008_scaffold_25
Species: Enterococcus faecium (98.02%)
101 101000 bp 38.65 11.22 88.27
NECEvent2014_2_8_scaffold_59
172_008_scaffold_59
Species: Enterococcus faecium (96.43%)
56 57614 bp 38.63 11.45 89.54
NECEvent2014_2_8_scaffold_196
172_008_scaffold_196
Species: Enterococcus faecium (100%)
10 13383 bp 38.62 11.47 85.41
NECEvent2014_2_8_scaffold_33
172_008_scaffold_33
Species: Enterococcus faecium (97.78%)
90 84489 bp 38.61 11.69 88.98
NECEvent2014_2_8_scaffold_169
172_008_scaffold_169
Species: Enterococcus faecium (100%)
15 17418 bp 38.56 10.95 87.20
NECEvent2014_2_8_scaffold_133
172_008_scaffold_133
Species: Enterococcus faecium (60%)
25 24105 bp 38.50 12.50 88.62
NECEvent2014_2_8_scaffold_69
172_008_scaffold_69
Species: Enterococcus faecium (100%)
44 50923 bp 38.42 12.19 86.57
NECEvent2014_2_8_scaffold_160
172_008_scaffold_160
Species: Enterococcus faecium (100%)
18 19023 bp 38.41 11.33 85.93
NECEvent2014_2_8_scaffold_93
172_008_scaffold_93
Species: Enterococcus faecium (93.33%)
30 38300 bp 38.34 11.86 92.26
NECEvent2014_2_8_scaffold_152
172_008_scaffold_152
Species: Enterococcus faecium (100%)
14 19864 bp 38.29 11.02 86.70
NECEvent2014_2_8_scaffold_53
172_008_scaffold_53
Species: Enterococcus faecium (98.28%)
58 63524 bp 38.19 11.58 89.43
NECEvent2014_2_8_scaffold_29
172_008_scaffold_29
Species: Enterococcus faecium (100%)
86 89257 bp 38.16 11.81 89.04
NECEvent2014_2_8_scaffold_173
172_008_scaffold_173
Species: Enterococcus faecium (100%)
19 16364 bp 38.08 10.43 84.92
NECEvent2014_2_8_scaffold_509
172_008_scaffold_509
Species: Enterococcus faecium (100%)
6 4702 bp 38.03 10.37 86.64
NECEvent2014_2_8_scaffold_92
172_008_scaffold_92
Species: Enterococcus faecium (100%)
38 38582 bp 38.03 11.67 85.73
NECEvent2014_2_8_scaffold_97
172_008_scaffold_97
Species: Enterococcus faecium (97.22%)
36 35697 bp 38.01 10.89 88.10
NECEvent2014_2_8_scaffold_588
172_008_scaffold_588
Species: Enterococcus faecium (83.33%)
6 4170 bp 37.99 9.89 72.73
NECEvent2014_2_8_scaffold_85
172_008_scaffold_85
Species: Enterococcus faecium (100%)
42 42439 bp 37.99 12.03 83.88
NECEvent2014_2_8_scaffold_1326
172_008_scaffold_1326
Species: Enterococcus faecium (100%)
2 2204 bp 37.93 12.66 71.19
NECEvent2014_2_8_scaffold_684
172_008_scaffold_684
Species: Enterococcus faecium (100%)
2 3621 bp 37.89 13.42 67.69
NECEvent2014_2_8_scaffold_41
172_008_scaffold_41
Species: Enterococcus faecium (97.47%)
79 78317 bp 37.89 11.65 88.82
NECEvent2014_2_8_scaffold_40
172_008_scaffold_40
Species: Enterococcus faecium (98.65%)
74 79036 bp 37.84 12.02 84.59
NECEvent2014_2_8_scaffold_5
172_008_scaffold_5
Species: Enterococcus faecium (98.37%)
184 180658 bp 37.83 11.77 90.46
NECEvent2014_2_8_scaffold_291
172_008_scaffold_291
Species: Enterococcus faecium (71.43%)
7 7856 bp 37.82 12.43 84.56
NECEvent2014_2_8_scaffold_45
172_008_scaffold_45
Species: Enterococcus faecium (88.89%)
63 72654 bp 37.65 11.57 84.97
NECEvent2014_2_8_scaffold_459
172_008_scaffold_459
Species: Enterococcus faecium (75%)
4 5107 bp 37.62 12.19 84.18
NECEvent2014_2_8_scaffold_83
172_008_scaffold_83
Species: Enterococcus faecium (100%)
40 43071 bp 37.61 12.57 87.33
Displaying items 1-50 of 95 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.