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NECEvent2014_3_2_scaffold_1989_1

Organism: NECEvent2014_3_2_Clostridium_ultunense-rel_32_9_partial

near complete RP 42 / 55 BSCG 45 / 51 MC: 2 ASCG 14 / 38 MC: 4
Location: comp(3..350)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MM86_ALKOO similarity UNIREF
DB: UNIREF100
  • Identity: 46.7
  • Coverage: 92.0
  • Bit_score: 105
  • Evalue 4.20e-20
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 46.7
  • Coverage: 92.0
  • Bit_score: 105
  • Evalue 1.20e-20
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABW18253.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphil similarity UNIPROT
DB: UniProtKB
  • Identity: 46.7
  • Coverage: 92.0
  • Bit_score: 105
  • Evalue 6.00e-20

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Taxonomy

Alkaliphilus oremlandii → Alkaliphilus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 348
GTGTTTATTCATCTAATTAGTAAGGGGAAGGAGGGGATGGACATTATCAAGCTTGATAACAAAATACTAGTTAAAAAAGTAAAATCAGGGGATTTAGAAAGCTTAATGCATTGGGTTATGGAAGGAAAAGATAAATTTTATAAAATAGCTTGGTCTTATGTATATAATCATCAGGATATTGAAGATATCTTTCAAAACACAATAATAAAAGTTCATGAGAAAATCAATACACTTAAAGATATTGAACTATTTGAGACTTGGTTTATATCCATATTAATAAATGAATGTAGGCAGTGTCTGAAAAGTAGAAAAAAGGAATTGCTTCATGAAGACATGGGAATCTATTAT
PROTEIN sequence
Length: 116
VFIHLISKGKEGMDIIKLDNKILVKKVKSGDLESLMHWVMEGKDKFYKIAWSYVYNHQDIEDIFQNTIIKVHEKINTLKDIELFETWFISILINECRQCLKSRKKELLHEDMGIYY