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NECEvent2014_3_4_scaffold_951_4

Organism: NECEvent2014_3_4_Atopobium_minutum-rel_49_5

near complete RP 49 / 55 MC: 4 BSCG 47 / 51 ASCG 12 / 38 MC: 1
Location: 1394..2182

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=2 Tax=Atopobium RepID=N2BT86_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 99.6
  • Coverage: 262.0
  • Bit_score: 506
  • Evalue 1.40e-140
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 1006 similarity UNIPROT
DB: UniProtKB
  • Identity: 99.6
  • Coverage: 262.0
  • Bit_score: 506
  • Evalue 2.00e-140
RNA polymerase sigma-37 subunit RpsB/SigB similarity KEGG
DB: KEGG
  • Identity: 80.6
  • Coverage: 263.0
  • Bit_score: 418
  • Evalue 1.10e-114

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Taxonomy

Atopobium minutum → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 789
ATGCCAACTAGTACACGACGCTCCTCGGGTAAGCTGGCGTGGGACAAGCAGCGTACTCATGAGCTTTTTCGTAGGTATAAAGAAAAAGGTGATGAGGACGCACGTGAGCAGCTTATCGTCAATCATCTTAATCTGGTACGTTTCTTAGCGGCCAAGTTTAAAAACCGTGGCGAACCTTTGGATGACTTAATCCAGGTTGGTACCGTGGGACTTATCAAAGCAATCGATCGTTTTGACCTTGAGCGTGGCCTTGAATTTACCACCTTTGCAACGCCTACTATTTTGGGTGAAATCAAGCGCCATTTTCGCGATAAGGGCTGGTCAGTACGGGTTCCTCGTCGCCTTCAAGAGCTTTCTGCCAAAGTTAATCAGGCTACGGATACCCTCACGGAGCAACTTCAGCGCAGTCCTTCTGTAGAAGAGATTGCTCAGTACCTAGGAACCTCCGTGGATGAGGTTTTGGAAGCTATGGAATCTTCCAGCGCATATAGCTCGGTGCCCTTGGAGGGCGGCTCGACTGATGACGAGGACGCTCCCTCGGTTATCGATAAATACGCAAGTGAGGATACCGCCCTGTCTACGGCAGATGATCGTATGGTCATAGAGCAGACCATTCGGGATTTTTCTCCGCGCGAGCAAGAGGTTATCCGCATGCGCTTTGTGGAAGGCCTGACACAGGTAGAAATTGCCGAGAAACTCGGTGTATCGCAGGTACAGGTTTCTAGGTTGCTGCGCCGCACCCTTAAGAAGATCCAAGAAAAGATTGACCCCGACTCTTTAGCACAATAG
PROTEIN sequence
Length: 263
MPTSTRRSSGKLAWDKQRTHELFRRYKEKGDEDAREQLIVNHLNLVRFLAAKFKNRGEPLDDLIQVGTVGLIKAIDRFDLERGLEFTTFATPTILGEIKRHFRDKGWSVRVPRRLQELSAKVNQATDTLTEQLQRSPSVEEIAQYLGTSVDEVLEAMESSSAYSSVPLEGGSTDDEDAPSVIDKYASEDTALSTADDRMVIEQTIRDFSPREQEVIRMRFVEGLTQVEIAEKLGVSQVQVSRLLRRTLKKIQEKIDPDSLAQ*