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NECEvent2014_3_5_scaffold_1347_3

Organism: NECEvent2014_3_5_Bifidobacterium_MSTE12-rel_59_7

near complete RP 52 / 55 MC: 6 BSCG 48 / 51 ASCG 14 / 38 MC: 3
Location: comp(2084..3220)

Top 3 Functional Annotations

Value Algorithm Source
rpoC; DNA-directed RNA polymerase subunit beta' RpoC (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 378.0
  • Bit_score: 750
  • Evalue 2.30e-214
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 378.0
  • Bit_score: 750
  • Evalue 1.20e-213
DNA-directed RNA polymerase subunit beta' n=7 Tax=Bifidobacterium RepID=D2Q603_BIFDB similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 378.0
  • Bit_score: 750
  • Evalue 8.20e-214

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Taxonomy

Bifidobacterium sp. MSTE12 → Bifidobacterium → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1137
GCCCACGGTGTGGAAGAGGTCAAGGCCCGTTCCGTGCTGACCTGCGAATCCAAGCGTGGCGTGTGCGCCAAGTGCTACGGCTGGTCCCTGGCCACCAACAAGCTGGTGGACGTCGGCGAAGCCGTCGGCATCGTGGCTGCACAGTCCATCGGCGAGCCTGGTACCCAGCTGACGCTGCGTTCCTTCCACTCCGGCGGCGTCGCATCCGCTTCCGATATCACCCAGGGTCTCCCGCGTGTTACCGAGCTTTTCGAAGCCCGTACCCCGAAGGGCGAGGCTCCGATCGCCGAGTTCCCGGGCGTGGTGAAGGTCGAAGACACCGATCGCGGTCGTCAGGTCACCCTGAAGCCGGACGACGACTCCGTCGAGCCGATCGTCTACCCGGTGACCCGTCGCGCTCCGATGCTGGTCAAGGACGGCGATCATGTCGAAGCCGGCACCCAGCTCATCGAGGGTTCCGTGGATCCGAAGAAGATCCTGCGCATCCTCGGTCCGCGCGCCGCTCAGGTCAACATCGTGGAGGAAGTGCACACCGTGTACCGCTCCCAGGGCGTGGATATCCACGACAAGCACATCGAGGTCATCGTGCACCAGATGCTGCGTCGTATCACCGTGATCGACTCCGGCGACACCGACCTGCTGCCGGGCGAACTCGTGGACCAGGCACGCTTCAAGGCCGCCAACATGGAGGCCGTGAAGAACGGTGGCAAGCCGGCCGCCGGCCGTCCGGAGCTGATGGGCATCACCAAGGCTTCGCTGGCCACCGACTCCTGGCTGTCCGCGGCCTCCTTCCAGGAGACCACCCGCGTACTCACCGAAGCCGCCCTGAGCCAGAAGGTCGATGACCTCAAGGGCCTCAAGGAGAACGTCATCATCGGTAAGCTCATCCCGGCCGGTACGGGTCTCGCCCGCTATCGCAATGCCGTGGTCGAGCCCGACAAGGCCATCCGTGACACCATCTACCCGAACTTCGGTCTGGGTGGCGACGAAACGGGTGCCGACTTCGGCGACGCCGATCTGTCCGATGTGGACTTCTCCAACATCGACTTCGGTGATTTGAAGCTCGGCGACGACTTCAACCCGGATGACTTCCTCGACGATAACGGCGGTCAGATGGATCTGGGAGACACCCTCTGA
PROTEIN sequence
Length: 379
AHGVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRSFHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDRGRQVTLKPDDDSVEPIVYPVTRRAPMLVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYRSQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDQARFKAANMEAVKNGGKPAAGRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDETGADFGDADLSDVDFSNIDFGDLKLGDDFNPDDFLDDNGGQMDLGDTL*