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NECEvent2014_3_5_scaffold_699_4

Organism: NECEvent2014_3_5_Atopobium_minutum-rel_49_9

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 ASCG 12 / 38 MC: 1
Location: 4202..4465

Top 3 Functional Annotations

Value Algorithm Source
30S ribosomal protein S20 n=2 Tax=Atopobium RepID=N2BTG0_9ACTN similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 87.0
  • Bit_score: 163
  • Evalue 7.60e-38
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium minutum 1006 similarity UNIPROT
DB: UniProtKB
  • Identity: 98.9
  • Coverage: 87.0
  • Bit_score: 162
  • Evalue 3.10e-37
SSU ribosomal protein S20P similarity KEGG
DB: KEGG
  • Identity: 77.0
  • Coverage: 87.0
  • Bit_score: 125
  • Evalue 6.40e-27

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Taxonomy

Atopobium minutum → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 264
GTGGCAAACATTAAGTCTCAGAAGAAGCGCATCAAAACTGCCGAGAAAGCTCGCATTCGCAACAAGGCAGTTCGTTCCGAGCTCAAGACTGCTGTAAAGAACGTTCGTCTTGCCGTAGAGGCAAATGACGTTGCAACAGCAACGCAGGCAGCTCAACATGCAGGTAAGCTCCTTGATAAGGCAGCTTCCAAGGGTATCATCCACAAGAATCAGGCAGCCAAGCGTAAGAGCGGCGTTGCTAAGCTTGTAAATACCATTGCATAA
PROTEIN sequence
Length: 88
VANIKSQKKRIKTAEKARIRNKAVRSELKTAVKNVRLAVEANDVATATQAAQHAGKLLDKAASKGIIHKNQAAKRKSGVAKLVNTIA*