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NECEvent2014_3_5_scaffold_1878_1

Organism: NECEvent2014_3_5_Staphylococcus_epidermidis_32_3_partial

partial RP 5 / 55 BSCG 4 / 51 ASCG 2 / 38
Location: 3..2294

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000255|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000255|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000255|HAMAP-Rule:MF_00969};; TaxID=176279 species="Bacteria; Fi similarity UNIPROT
DB: UniProtKB
  • Identity: 99.7
  • Coverage: 764.0
  • Bit_score: 1507
  • Evalue 0.0
Transcription-repair-coupling factor n=20 Tax=Staphylococcus RepID=MFD_STAEQ similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 764.0
  • Bit_score: 1507
  • Evalue 0.0
  • rbh
Transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 99.7
  • Coverage: 764.0
  • Bit_score: 1507
  • Evalue 0.0

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Taxonomy

Staphylococcus epidermidis → Staphylococcus → Bacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 2292
ATGGGTTATCGTCGAGAAAGTGTAGTGTCACATATTGGTGAGTTTTCATTGCGTGGTGGAATTATAGATATATATCCATTGGTAGGAACACCTGTGAGAATAGAGCTATTTGATACTGAAGTAGATTCCATCAGAGACTTTGATGTAGAAACACAACGTTCTAACGATAATATAAATCAAGTTGAAATCACAACAGCCAGTGATTACATTATTACTGATGAAGTGATACAACACTTACAAAATGAACTTAAAAAAGCATATGAATATACACGCCCTAAAATTGAAAAGTCCGTACGTAATGATTTAAAAGAGACATATGAAAGTTTTAAGTTGTTTGAATCTACCTTTTTCGATCATCAATTGTTACGACGTCTTGTTTCATTTATGTATGAAAAACCATCAACCCTTATTGACTATTTTCAAAAAAACGCGATTGTTGTAGTTGATGAGTTTAATCGTATTAAGGAAACAGAAGAAACACTCACTACAGAAGTTGAAGATTTTATGAGTAACTTAATTGAGAGTGGAAATGGATTTATCGGACAAGGATTTATGAAGTATGAAAGTTTTGACGCATTATTAGAGCAACATGCCGTTGCATATTTCACATTATTTACATCTTCGATGCAAGTACCATTACAACATATTATTAAGTTCTCTTGTAAACCAGTTCAACAATTTTATGGTCAATATGACATTATGCGCTCGGAATTTCAAAGATACGTGCATCAAGATTACACTGTCGTAGTTCTTGTTGAAACTGAAACAAAAGTTGAACGTATTCAATCAATGCTTAATGAAATGCATATTCCAACAGTATCAAATATTCATGAAGATATTGATGGTGGTCAAGTTGTAGTAACGGAAGGTAGTCTTTCTGAAGGCTTTGAATTACCTTATATGCAGTTGGTAGTCATCACAGAAAGAGAATTATTTAAAACGAGACAAAAGAAACAACGTAAACGTACAAAAACGATTTCTAATGCTGAAAAAATAAAATCATATCAAGACTTAAATGTGGGCGATTATATAGTGCATGTGCATCATGGTGTCGGACGATACTTAGGTGTTGAAACACTAGAAGTTGGAGATACACATCGCGACTATATTAAATTGCAATATAAAGGAACTGATCAATTATTCGTTCCAGTTGATCAAATGGATCAAGTTCAAAAGTATGTGGCTTCTGAAGATAAGTCGCCTAGATTAAATAAATTAGGCGGGACAGAATGGAAAAAAACAAAGGCCAAAGTTCAACAAAGTGTTGAAGATATAGCTGATGAATTAATTGATTTGTATAAAGAACGTGAAATGTCTGTAGGTTATCAATACGGCCAAGATACTGCAGAGCAATCAGCATTTGAGCATGATTTTCCATATGAATTAACACCCGATCAAAGTAAGTCAATCGATGAAATTAAAGGTGACATGGAAAGAGCAAGACCTATGGACCGTCTTCTTTGTGGTGATGTGGGATATGGTAAAACTGAAGTGGCTGTCCGTGCAGCGTTTAAAGCTGTCATGGATGGTAAGCAAGTTGCGTTTTTAGTACCAACAACGATTCTTGCACAACAACACTACGAAACACTACTTGAACGTATGCAAGATTTTCCGGTCGAAATTCAATTGGTAAGTCGATTCCGCACAGCTAAAGAAATAAGGGAAACTAAAGAAGGGCTCAAATCAGGATATGTTGACATTGTCGTAGGTACACATAAATTATTAGGTAAAGATATTCAATATAAAGATTTGGGATTGCTTATTGTTGATGAAGAACAACGTTTTGGAGTGCGACATAAAGAACGCATTAAAACTTTGAAAAAAAACGTTGATGTACTGACGCTTACTGCAACACCAATACCAAGAACATTGCATATGAGTATGTTAGGTGTACGTGACTTATCAGTGATTGAAACACCACCTGAAAATCGTTTTCCTGTACAAACTTATGTCTTAGAACAGAATACGAACTTTATTAAAGAGGCATTAGAGCGTGAATTATCTCGCGATGGACAAGTATTTTATTTGTATAACAAAGTGCAGTCCATTTATGAAAAAAGAGAACAACTTCAAAGGTTAATGCCTGACGCTAACATTGCTGTAGCACATGGCCAAATGACTGAACGTGATTTAGAGGAAACAATGTTAAGCTTTATTAATCACGAGTACGATATTTTAGTAACGACTACAATTATTGAAACAGGTGTAGATGTACCAAATGCTAATACGTTAATCATAGAAGAGGCCGATCGTTTTGGATTAAGCCAGCTATACCAATTAAGAGGGCGTGTA
PROTEIN sequence
Length: 764
MGYRRESVVSHIGEFSLRGGIIDIYPLVGTPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKKAYEYTRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVSFMYEKPSTLIDYFQKNAIVVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQGFMKYESFDALLEQHAVAYFTLFTSSMQVPLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVHQDYTVVVLVETETKVERIQSMLNEMHIPTVSNIHEDIDGGQVVVTEGSLSEGFELPYMQLVVITERELFKTRQKKQRKRTKTISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRV