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NECEvent2014_3_6_scaffold_55_33

Organism: NECEvent2014_3_6_Pseudomonas_aeruginosa_65_49

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 15 / 38 MC: 2
Location: 47558..48121

Top 3 Functional Annotations

Value Algorithm Source
Sigma factor PvdS n=57 Tax=Pseudomonas RepID=B7V8N8_PSEA8 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 187.0
  • Bit_score: 370
  • Evalue 1.10e-99
  • rbh
Sigma factor PvdS, controling pyoverdin biosynthesis similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 187.0
  • Bit_score: 370
  • Evalue 3.20e-100
PvdS {ECO:0000313|EMBL:BAA07851.1}; RNA polymerase sigma70 {ECO:0000313|EMBL:AKE69711.1}; Sigma factor PvdS {ECO:0000313|EMBL:BAR67765.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacte similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 187.0
  • Bit_score: 370
  • Evalue 1.60e-99

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGTCGGAACAACTGTCTACCCGCAGATGCGATACCCCGCTCCTCCAGGCATTCGTCGATAACCGTACGATCCTGGTGAAGATCGCCGCCCGCATTACCGGTTGCCGCTCGCGAGCCGAAGATGTGGTCCAGGATGCGTTCTTCAGGCTCCAGTCGGCGCCGCAGATCACTTCGTCGTTCAAGGCACAGCTCAGCTACCTGTTCCAGATCGTCCGCAACCTGGCCATCGATCACTACCGCAAGCAGGCGCTCGAACAGAAATACTCGGGGCCGGAGGAAGAAGGCCTGAACGTGGTGATCCAGGGCGCCTCGCCGGAAACCTCGCACATCAACTACGCGACCCTCGAACACATCGCGGATGCCCTCACCGAGCTGCCCAAGCGCACCCGCTACGCCTTCGAGATGTACCGCCTGCACGGCGTGCCGCAGAAGGACATCGCCAAGGAACTGGGCGTCTCGCCGACCCTGGTCAACTTCATGATCCGCGACGCCCTGGTGCACTGCCGCAAGGTCACCGCCGAGCGCCAGGGCGACAACGTCACCCATCTCAGCGCCCGTCGCTGA
PROTEIN sequence
Length: 188
MSEQLSTRRCDTPLLQAFVDNRTILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVRNLAIDHYRKQALEQKYSGPEEEGLNVVIQGASPETSHINYATLEHIADALTELPKRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVTAERQGDNVTHLSARR*