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NECEvent2014_4_1_scaffold_283

Alias: 174_001_scaffold_283

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_4_1_scaffold_283_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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718..1743
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9ZZY9_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ87272.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_4_1_scaffold_283_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1842..3218)
DNA (1377bp) protein (459aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutam
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AAM2_CLOBU rbh
NECEvent2014_4_1_scaffold_283_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3512..4903)
DNA (1392bp) protein (464aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
glyQS; glycine--tRNA ligase (EC:6.1.1.14) rbh
Glycine--tRNA ligase n=4 Tax=Clostridium butyricum RepID=B1R1R7_CLOBU rbh
NECEvent2014_4_1_scaffold_283_trna_6
unknown

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comp(5306..5377)
DNA (72bp)
transferRNA
NECEvent2014_4_1_scaffold_283_4
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5363..5680
DNA (318bp) protein (106aa)
Single-stranded DNA-binding protein n=4 Tax=Clostridium butyricum RepID=B1R1R8_CLOBU
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1523156 species="Bacteria; Firmicutes; Clostri
single stranded DNA-binding protein
NECEvent2014_4_1_scaffold_283_trna_5
unknown

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comp(5916..5987)
DNA (72bp)
transferRNA
NECEvent2014_4_1_scaffold_283_trna_4
unknown

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comp(6154..6225)
DNA (72bp)
transferRNA
NECEvent2014_4_1_scaffold_283_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6406..7911)
DNA (1506bp) protein (502aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
lysS; lysine--tRNA ligase LysS (EC:6.1.1.6)
Lysine--tRNA ligase n=4 Tax=Clostridium butyricum RepID=B1R1R9_CLOBU rbh
NECEvent2014_4_1_scaffold_283_6
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7926..8411)
DNA (486bp) protein (162aa)
Transcription elongation factor GreA n=4 Tax=Clostridium butyricum RepID=B1R1S0_CLOBU rbh
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1523156 species="Bacteri
greA1; transcription elongation factor GreA
NECEvent2014_4_1_scaffold_283_7
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8758..9723)
DNA (966bp) protein (322aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clost
dus; tRNA-dihydrouridine synthase 1 (EC:1.-.-.-)
tRNA-dihydrouridine synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J5Q1_CLOBU rbh
NECEvent2014_4_1_scaffold_283_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9731..10513)
DNA (783bp) protein (261aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-R
Type III pantothenate kinase n=4 Tax=Clostridium butyricum RepID=B1R1S2_CLOBU rbh
pantothenate kinase
NECEvent2014_4_1_scaffold_283_9
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10642..12312)
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1523155 sp
fhs; formate--tetrahydrofolate ligase Fhs (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K1B4_CLOBU rbh
NECEvent2014_4_1_scaffold_283_10
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12593..14398)
DNA (1806bp) protein (602aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
ftsH1; ATP-dependent zinc metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACE2_CLOBU rbh
NECEvent2014_4_1_scaffold_283_11
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14460..14999)
DNA (540bp) protein (180aa)
Hypoxanthine phosphoribosyltransferase n=4 Tax=Clostridium butyricum RepID=B1R1S6_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83345.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
hypoxanthine phosphoribosyltransferase
NECEvent2014_4_1_scaffold_283_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15001..16380)
DNA (1380bp) protein (460aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine
tilS; tRNA(Ile)-lysidine synthase TilS (EC:6.3.4.19)
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AAM9_CLOBU rbh
NECEvent2014_4_1_scaffold_283_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16529..18925)
DNA (2397bp) protein (799aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E n=2 Tax=Clostridium butyricum RepID=M8K9F2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83336.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
NECEvent2014_4_1_scaffold_283_14
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19339..20277)
DNA (939bp) protein (313aa)
Malonate transporter n=2 Tax=Clostridium butyricum RepID=M8K1B8_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:KJZ83333.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
putative malate transporter
NECEvent2014_4_1_scaffold_283_trna_3
unknown

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comp(20364..20449)
DNA (86bp)
transferRNA
NECEvent2014_4_1_scaffold_283_trna_2
unknown

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comp(20468..20540)
DNA (73bp)
transferRNA
NECEvent2014_4_1_scaffold_283_trna_1
unknown

Not on your lists

comp(20563..20648)
DNA (86bp)
transferRNA
Displaying 20 items

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