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NECEvent2014_4_3_scaffold_390_4

Organism: NECEvent2014_4_3_Clostridium_perfringens_28_16

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(2681..3340)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-I factor n=3 Tax=Clostridium perfringens RepID=H1CUG4_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 219.0
  • Bit_score: 431
  • Evalue 6.40e-118
  • rbh
Putative DNA-directed RNA polymerase sigma factor {ECO:0000313|EMBL:EDT72691.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridi similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 219.0
  • Bit_score: 431
  • Evalue 9.00e-118
RNA polymerase sigma factor SigI similarity KEGG
DB: KEGG
  • Identity: 50.0
  • Coverage: 216.0
  • Bit_score: 203
  • Evalue 4.70e-50

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Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 660
ATGACAAATATTACTTTAAATGATAAAGATATAAATGAACTGGTTGAAGATAATATTAGATTTATACTAAATACAATCTCTAACTTGACTGGAAGATATGTATCTATTGAAAATGATGAAGAATTTAGTTTGGGAATATTAGCCTTTGTTGAAGCTGTAGAAAAATATAATTCTCAAAAAGGTAACTTTCATTCATTTGCGAAATTAGTAATAGAGAGTAGAATAAAGAATTATTTAAATAAGGAAAAGAAATATAGGGAAATGATTTCTGTGGAGTATTTAAATGATTTAGGGATAGATATCACTAATATAGTACATAATCCCATCGAAAATAAAGATGAACTTATTAAAGAAATACATAAATTTAAAAAAGAAATATTGTTATTTAAAATTAAACTTGATGATTTAATAAATAATTCTCCTAAGCATAGAGATACAAGAACATTTTCTATTAATCTTTCAGAGCAAGTTAGCCATGATTCAGAAGTAACTACATTTATGTATGAAAAGAGAAGATTACCTGTAAAAAAAATTTCCTTAAAATATGTAGTTACAGAAAGAATTTTAAAGAGAAATAAATTATTTATAATATCAGTTATAGTAATTTTCTTTAAAAAATATAGGAATATAATACTCTGGATAAAAAATAAGGGGGAATAA
PROTEIN sequence
Length: 220
MTNITLNDKDINELVEDNIRFILNTISNLTGRYVSIENDEEFSLGILAFVEAVEKYNSQKGNFHSFAKLVIESRIKNYLNKEKKYREMISVEYLNDLGIDITNIVHNPIENKDELIKEIHKFKKEILLFKIKLDDLINNSPKHRDTRTFSINLSEQVSHDSEVTTFMYEKRRLPVKKISLKYVVTERILKRNKLFIISVIVIFFKKYRNIILWIKNKGE*