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NECEvent2014_4_3_scaffold_177_1

Organism: NECEvent2014_4_3_Clostridium_perfringens_28_16

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: 109..627

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R6H1_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 172.0
  • Bit_score: 334
  • Evalue 8.40e-89
  • rbh
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:EDT24106.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium p similarity UNIPROT
DB: UniProtKB
  • Identity: 99.4
  • Coverage: 172.0
  • Bit_score: 332
  • Evalue 3.40e-88
sigW; RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 172.0
  • Bit_score: 331
  • Evalue 2.00e-88

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Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 519
GTGGAGTTATTATCATTTTTAGAGCATAGAAAAACTTCAATGGTTTCTCAAGCAAAGAAAGGAGATAAGGATGCCTTTTTAAGTCTTATAGATGAGAATAGATTAAGTATCTATAGGGTTGCTAGGGGAATTTTAAATAACAAGGAAGACATAGAAGATGCACTTCAGAATACAATAATAAAATCTTATGAGAAGATAGGAACTTTAAAAAAGGATGAGTTCTTTAAAACTTGGATAATAAGGATTTTAATAAATGAGTGTAATTTGATATTAAGAAGAAATAAAAAGACCATATTTTTAGATAAGTTAGAAAATGAAGAGTCTTATAGTGATGACTATGGAAATATTGAGTTAACATCTGTAGTTAATTCATTAAGTGAGGATTTAAGAATAACTACAGTATTATATTATTTTGAAGATATGTCTACTAAAGAGATATCAGAAATGTTAAATATAGCTGAAGGAACAGTAAGATCAAGACTGGCTAGGGCAAGAGAAAAGCTTAGAGATTTTATATAA
PROTEIN sequence
Length: 173
VELLSFLEHRKTSMVSQAKKGDKDAFLSLIDENRLSIYRVARGILNNKEDIEDALQNTIIKSYEKIGTLKKDEFFKTWIIRILINECNLILRRNKKTIFLDKLENEESYSDDYGNIELTSVVNSLSEDLRITTVLYYFEDMSTKEISEMLNIAEGTVRSRLARAREKLRDFI*