ggKbase home page

NECEvent2014_4_3_scaffold_218_7

Organism: NECEvent2014_4_3_Clostridium_perfringens_28_16

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 15 / 38 MC: 1
Location: comp(6808..7410)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CPQ9_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 200.0
  • Bit_score: 388
  • Evalue 4.30e-105
  • rbh
RNA polymerase sigma-70 factor, ECF family {ECO:0000313|EMBL:EDT24581.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perf similarity UNIPROT
DB: UniProtKB
  • Identity: 98.5
  • Coverage: 200.0
  • Bit_score: 387
  • Evalue 1.40e-104
ECF subfamily RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 97.4
  • Coverage: 194.0
  • Bit_score: 373
  • Evalue 3.10e-101

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 603
ATGAATTTTACTGAAGATGGTGGGGTGAGACGGATTAATGAAAAGAAATTAATAACCCTTGTAAAAAAGAATAATGATAAAAAAGCAGCTGGAGAGATTGTTAAGTTTTATTATAAGGAGATATTTGCTTATGTTTTTAAGCAAACATCTAATGAGGAGTTATCTAAGGATTTAACTCAAGAAATATTTATTTCTATGCTTAAATCCTTAGGGGGATTTGATGATGAAAAGGCTTCCTTTAGGACATGGCTTTATAAAATAGCCAGTAACAAGATAATCGATAACTACAGGTCTACATACTATAAATATGTTACTGTTGTAGATGAATTTGAGGAAGGATTAGTAGGCTATGAAAATGATTTGGAAGAATCATTTCAGATTAAGGAAGATGCTAAGGAGATATTAGATATTATTAATACTTTAAATACAAGCATTCAGCAAATTTTAAGACTAAAGATATTTGGAGGAATGACATTTTTAGAGATTGCTTCTTTAATTGATATGTCAGAATCTACAGTTAAAACTAAATATTATTCAAGTATTAGAAAGATAAAGAAGATATTGGAGGTGAAGAAGAATGAACAGAGAAAAAGAGGAGTTTAA
PROTEIN sequence
Length: 201
MNFTEDGGVRRINEKKLITLVKKNNDKKAAGEIVKFYYKEIFAYVFKQTSNEELSKDLTQEIFISMLKSLGGFDDEKASFRTWLYKIASNKIIDNYRSTYYKYVTVVDEFEEGLVGYENDLEESFQIKEDAKEILDIINTLNTSIQQILRLKIFGGMTFLEIASLIDMSESTVKTKYYSSIRKIKKILEVKKNEQRKRGV*