ggKbase | organisms

NECEvent2014_4_5_UNK

In projects: NECEvent2014_4_5

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.42 Longest contig: 13.46 Kbp Bin length: 926.56 Kbp GC content: 37.82 %

Contigs count: 344 Features count: 1197 rRNAs count: 5 tRNAs count: 46

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 2 / 38

Displaying items 201-250 of 344 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
NECEvent2014_4_5_scaffold_3113 174_005_scaffold_3113 Species: Citrobacter sp. MGH 55 (50%)	2	1541 bp	51.33	3.89	91.50
NECEvent2014_4_5_scaffold_4130 174_005_scaffold_4130 Species: Sutterella wadsworthensis CAG:135 (50%)	2	1050 bp	50.76	3.14	74.86
NECEvent2014_4_5_scaffold_3642 174_005_scaffold_3642 Species: Desulfitobacterium dehalogenans (50%)	2	1249 bp	35.71	27.26	100.16
NECEvent2014_4_5_scaffold_4147 174_005_scaffold_4147 Species: Enterobacter cloacae (50%)	2	1044 bp	48.56	2.30	65.80
NECEvent2014_4_5_scaffold_3901 174_005_scaffold_3901 Species: Finegoldia magna (100%)	2	1131 bp	35.54	9.55	100.00
NECEvent2014_4_5_scaffold_3646 174_005_scaffold_3646 Species: Enterobacter cloacae (50%)	2	1247 bp	54.77	3.61	95.51
NECEvent2014_4_5_scaffold_4150 174_005_scaffold_4150 Species: Campylobacter jejuni (50%)	2	1043 bp	40.27	5.32	62.13
NECEvent2014_4_5_scaffold_3393 174_005_scaffold_3393 Species: Klebsiella pneumoniae (50%)	2	1372 bp	54.23	2.62	59.04
NECEvent2014_4_5_scaffold_3394 174_005_scaffold_3394 Species: Enterobacter sp. 35683 (50%)	2	1372 bp	58.24	3.50	90.96
NECEvent2014_4_5_scaffold_2387 174_005_scaffold_2387 Species: Oceanobacillus picturae (50%)	2	2298 bp	35.29	44.65	88.51
NECEvent2014_4_5_scaffold_3397 174_005_scaffold_3397 Species: Enterobacter cloacae (100%)	2	1371 bp	51.35	2.63	94.53
NECEvent2014_4_5_scaffold_3656 174_005_scaffold_3656 Species: Lachnospiraceae bacterium M18-1 (50%)	2	1243 bp	33.79	3.14	80.13
NECEvent2014_4_5_scaffold_3913 174_005_scaffold_3913 Species: Enterobacter hormaechei (50%)	2	1128 bp	58.78	2.93	100.53
NECEvent2014_4_5_scaffold_3403 174_005_scaffold_3403 Species: Peptoclostridium difficile (50%)	2	1368 bp	58.48	4.71	100.66
NECEvent2014_4_5_scaffold_3407 174_005_scaffold_3407 Species: Lelliottia amnigena (50%)	2	1366 bp	55.78	2.64	90.04
NECEvent2014_4_5_scaffold_3152 174_005_scaffold_3152 Species: Alkaliphilus metalliredigens (100%)	2	1513 bp	46.93	3.57	89.23
NECEvent2014_4_5_scaffold_3409 174_005_scaffold_3409	2	1365 bp	24.32	2.86	17.80
NECEvent2014_4_5_scaffold_3417 174_005_scaffold_3417	2	1362 bp	28.12	7.27	15.35
NECEvent2014_4_5_scaffold_3163 174_005_scaffold_3163 Species: Lelliottia amnigena (50%)	2	1510 bp	57.62	2.58	95.96
NECEvent2014_4_5_scaffold_2923 174_005_scaffold_2923 Species: Olsenella profusa (50%)	2	1705 bp	58.01	4.40	64.05
NECEvent2014_4_5_scaffold_3166 174_005_scaffold_3166 Species: Salinicoccus halodurans (100%)	2	1508 bp	23.34	4.87	99.67
NECEvent2014_4_5_scaffold_3678 174_005_scaffold_3678 Species: Enterobacter aerogenes (50%)	2	1232 bp	49.84	2.68	99.35
NECEvent2014_4_5_scaffold_2670 174_005_scaffold_2670 Species: Pyramidobacter piscolens (50%)	2	1942 bp	23.07	3.63	64.42
NECEvent2014_4_5_scaffold_3167 174_005_scaffold_3167 Species: Lelliottia amnigena (50%)	2	1507 bp	58.86	2.59	99.93
NECEvent2014_4_5_scaffold_3425 174_005_scaffold_3425 Species: Finegoldia magna (50%)	2	1357 bp	28.96	13.60	97.27
NECEvent2014_4_5_scaffold_4185 174_005_scaffold_4185 Species: Peptostreptococcus sp. MV1 (50%)	2	1031 bp	28.32	46.56	82.35
NECEvent2014_4_5_scaffold_3686 174_005_scaffold_3686 Species: marine sediment metagenome (50%)	2	1228 bp	67.67	5.13	99.92
NECEvent2014_4_5_scaffold_4194 174_005_scaffold_4194 Species: Enterobacter sp. 35683 (50%)	2	1027 bp	45.86	2.78	64.26
NECEvent2014_4_5_scaffold_3949 174_005_scaffold_3949 Species: Enterobacter hormaechei (50%)	2	1109 bp	51.94	3.79	79.26
NECEvent2014_4_5_scaffold_3957 174_005_scaffold_3957 Species: Enterobacter sp. DC4 (50%)	2	1107 bp	55.56	3.93	100.27
NECEvent2014_4_5_scaffold_3966 174_005_scaffold_3966 Species: Lelliottia amnigena (50%)	2	1104 bp	55.89	3.53	92.39
NECEvent2014_4_5_scaffold_3456 174_005_scaffold_3456 Species: Synergistes jonesii (50%)	2	1341 bp	44.59	4.03	62.19
NECEvent2014_4_5_scaffold_1936 174_005_scaffold_1936 Species: Veillonella dispar (50%)	2	3051 bp	38.87	15.78	93.71
NECEvent2014_4_5_scaffold_3715 174_005_scaffold_3715 Species: Mogibacterium sp. CM50 (100%)	2	1210 bp	39.75	3.72	44.88
NECEvent2014_4_5_scaffold_3717 174_005_scaffold_3717 Species: Enterobacter asburiae (50%)	2	1210 bp	54.05	3.47	76.12
NECEvent2014_4_5_scaffold_3206 174_005_scaffold_3206	2	1489 bp	48.62	13.50	8.06
NECEvent2014_4_5_scaffold_3465 174_005_scaffold_3465 Species: Enterobacter sp. 35683 (100%)	2	1337 bp	51.46	3.14	98.95
NECEvent2014_4_5_scaffold_3469 174_005_scaffold_3469 Species: Cronobacter sakazakii (50%)	2	1336 bp	54.94	122.72	95.66
NECEvent2014_4_5_scaffold_2973 174_005_scaffold_2973 Species: Anoxybacillus sp. BCO1 (50%)	2	1650 bp	52.61	520.45	6.55
NECEvent2014_4_5_scaffold_2463 174_005_scaffold_2463 Species: Bifidobacterium breve (50%)	2	2196 bp	44.99	6.01	99.86
NECEvent2014_4_5_scaffold_3730 174_005_scaffold_3730 Species: Klebsiella variicola (100%)	2	1205 bp	53.28	94.85	97.10
NECEvent2014_4_5_scaffold_3987 174_005_scaffold_3987 Species: [Clostridium] sordellii (50%)	2	1098 bp	64.12	4.10	100.27
NECEvent2014_4_5_scaffold_2468 174_005_scaffold_2468 Species: Halomonas sp. R57-5 (50%)	2	2189 bp	26.50	4.59	100.59
NECEvent2014_4_5_scaffold_3734 174_005_scaffold_3734 Species: Actinomyces urogenitalis (50%)	2	1204 bp	64.37	35.88	76.50
NECEvent2014_4_5_scaffold_2470 174_005_scaffold_2470 Species: Peptoniphilus duerdenii (100%)	2	2186 bp	28.36	8.71	69.72
NECEvent2014_4_5_scaffold_2985 174_005_scaffold_2985 Species: Clostridiales bacterium S5-A11 (50%)	2	1638 bp	31.87	24.45	96.15
NECEvent2014_4_5_scaffold_3230 174_005_scaffold_3230 Species: Eggerthella lenta (50%)	2	1475 bp	49.76	4.88	88.07
NECEvent2014_4_5_scaffold_2990 174_005_scaffold_2990 Species: Hungatella hathewayi (50%)	2	1633 bp	49.36	6.43	103.43
NECEvent2014_4_5_scaffold_2996 174_005_scaffold_2996 Species: Escherichia coli (50%)	2	1625 bp	20.86	3.97	96.18
NECEvent2014_4_5_scaffold_4265 174_005_scaffold_4265 Species: Veillonella atypica (50%)	2	1000 bp	26.40	6.00	53.70

Displaying items 201-250 of 344 in total

NECEvent2014_4_5_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

NECEvent2014_4_5_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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