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NECEvent2014_4_5_Eggerthella_1_3_56FAA-rel_64_5_partial

NECEvent2014_4_5_Eggerthella_64_5
In projects: NECEvent2014_4_5

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

Small C. diff scaffs added based on ESOM

Displaying items 351-400 of 990 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_4_5_scaffold_3176 174_005_scaffold_3176
Species: Eggerthella sp. HGA1 (50%)
2 1504 bp 66.42 4.79 94.15
NECEvent2014_4_5_scaffold_2205 174_005_scaffold_2205
Species: Eggerthella sp. HGA1 (66.67%)
3 2570 bp 67.98 4.32 94.09
NECEvent2014_4_5_scaffold_2280 174_005_scaffold_2280
Species: Peptoclostridium difficile (50%)
2 2443 bp 64.72 5.28 94.06
NECEvent2014_4_5_scaffold_1821 174_005_scaffold_1821
Species: Eggerthella sp. HGA1 (75%)
4 3352 bp 64.68 4.83 94.06
NECEvent2014_4_5_scaffold_3541 174_005_scaffold_3541
Species: Eggerthella sp. HGA1 (50%)
2 1302 bp 66.97 7.03 94.01
NECEvent2014_4_5_scaffold_1168 174_005_scaffold_1168
Domain: Bacteria (57.14%)
7 6096 bp 51.33 5.46 94.00
NECEvent2014_4_5_scaffold_3581 174_005_scaffold_3581
Species: Eggerthella lenta (50%)
2 1280 bp 64.53 5.39 93.98
NECEvent2014_4_5_scaffold_2982 174_005_scaffold_2982
Species: Eggerthella sp. HGA1 (66.67%)
3 1641 bp 64.53 5.39 93.97
NECEvent2014_4_5_scaffold_2296 174_005_scaffold_2296
Species: Eggerthella lenta (50%)
2 2418 bp 60.13 5.09 93.92
NECEvent2014_4_5_scaffold_3604 174_005_scaffold_3604
Species: Eggerthella sp. HGA1 (50%)
2 1265 bp 58.18 4.03 93.91
NECEvent2014_4_5_scaffold_1390 174_005_scaffold_1390
Species: Eggerthella lenta (50%)
4 4859 bp 61.47 6.08 93.91
NECEvent2014_4_5_scaffold_1531 174_005_scaffold_1531
Species: Eggerthella lenta (100%)
3 4263 bp 67.35 5.21 93.88
NECEvent2014_4_5_scaffold_3271 174_005_scaffold_3271
Species: Eggerthella lenta (100%)
2 1448 bp 64.78 4.77 93.85
NECEvent2014_4_5_scaffold_4062 174_005_scaffold_4062
Species: Eggerthella sp. HGA1 (100%)
2 1071 bp 67.69 4.76 93.84
NECEvent2014_4_5_scaffold_1271 174_005_scaffold_1271
Species: Eggerthella lenta (50%)
6 5505 bp 62.51 5.67 93.79
NECEvent2014_4_5_scaffold_2635 174_005_scaffold_2635
Species: Eggerthella lenta (50%)
2 1974 bp 60.99 4.86 93.77
NECEvent2014_4_5_scaffold_2355 174_005_scaffold_2355
Species: Eggerthella lenta (100%)
3 2342 bp 67.12 5.70 93.77
NECEvent2014_4_5_scaffold_2811 174_005_scaffold_2811
Species: Eggerthella lenta (100%)
3 1807 bp 68.57 4.32 93.64
NECEvent2014_4_5_scaffold_1892 174_005_scaffold_1892
Species: Eggerthella sp. HGA1 (66.67%)
3 3179 bp 61.87 5.38 93.61
NECEvent2014_4_5_scaffold_2398 174_005_scaffold_2398
Species: Eggerthella sp. HGA1 (75%)
4 2285 bp 62.58 5.97 93.61
NECEvent2014_4_5_scaffold_2623 174_005_scaffold_2623
Species: Eggerthella sp. HGA1 (50%)
2 1992 bp 64.16 6.33 93.52
NECEvent2014_4_5_scaffold_2025 174_005_scaffold_2025
Species: Eggerthella sp. HGA1 (100%)
3 2866 bp 57.89 5.02 93.48
NECEvent2014_4_5_scaffold_3561 174_005_scaffold_3561
Species: Peptoclostridium difficile (50%)
2 1291 bp 62.20 5.34 93.42
NECEvent2014_4_5_scaffold_2092 174_005_scaffold_2092
Species: Eggerthella lenta (66.67%)
3 2738 bp 70.49 4.05 93.35
NECEvent2014_4_5_scaffold_2486 174_005_scaffold_2486
Species: Eggerthella lenta (50%)
2 2163 bp 64.03 4.09 93.34
NECEvent2014_4_5_scaffold_2370 174_005_scaffold_2370
Species: Peptoclostridium difficile (50%)
4 2325 bp 64.73 5.16 93.29
NECEvent2014_4_5_scaffold_1634 174_005_scaffold_1634
Species: Eggerthella sp. HGA1 (50%)
4 3895 bp 55.22 5.43 93.27
NECEvent2014_4_5_scaffold_2688 174_005_scaffold_2688
Species: Peptoclostridium difficile (100%)
3 1917 bp 69.27 4.93 93.27
NECEvent2014_4_5_scaffold_1668 174_005_scaffold_1668
Species: Eggerthella sp. HGA1 (75%)
4 3825 bp 64.39 6.31 93.25
NECEvent2014_4_5_scaffold_1589 174_005_scaffold_1589
Species: Eggerthella sp. HGA1 (75%)
4 4025 bp 64.30 4.25 93.24
NECEvent2014_4_5_scaffold_1711 174_005_scaffold_1711
Genus: Eggerthella (66.67%)
3 3675 bp 62.10 4.29 93.22
NECEvent2014_4_5_scaffold_3371 174_005_scaffold_3371
Species: Peptoclostridium difficile (100%)
1 1387 bp 64.17 3.68 93.22
NECEvent2014_4_5_scaffold_2415 174_005_scaffold_2415
Species: Eggerthella lenta (100%)
2 2272 bp 62.98 4.36 93.22
NECEvent2014_4_5_scaffold_2325 174_005_scaffold_2325
Species: Enterorhabdus caecimuris (50%)
2 2375 bp 62.61 4.48 93.22
NECEvent2014_4_5_scaffold_2079 174_005_scaffold_2079
Species: Eggerthella sp. HGA1 (50%)
4 2759 bp 66.04 6.36 92.97
NECEvent2014_4_5_scaffold_3651 174_005_scaffold_3651
Species: Peptoclostridium difficile (100%)
2 1246 bp 64.29 7.95 92.94
NECEvent2014_4_5_scaffold_3160 174_005_scaffold_3160
Species: Eggerthella lenta (50%)
2 1511 bp 64.66 4.37 92.92
NECEvent2014_4_5_scaffold_1341 174_005_scaffold_1341
Species: Eggerthella sp. HGA1 (60%)
5 5102 bp 63.90 4.85 92.90
NECEvent2014_4_5_scaffold_2109 174_005_scaffold_2109
Species: Eggerthella lenta (50%)
2 2713 bp 68.12 5.20 92.89
NECEvent2014_4_5_scaffold_3264 174_005_scaffold_3264
Species: Eggerthella sp. HGA1 (50%)
2 1451 bp 65.47 5.07 92.83
NECEvent2014_4_5_scaffold_2977 174_005_scaffold_2977
Species: Eggerthella lenta (66.67%)
3 1645 bp 67.29 5.56 92.83
NECEvent2014_4_5_scaffold_3007 174_005_scaffold_3007
Species: Peptoclostridium difficile (50%)
2 1617 bp 65.31 3.34 92.76
NECEvent2014_4_5_scaffold_3103 174_005_scaffold_3103
Species: Eggerthella sp. HGA1 (75%)
4 1546 bp 69.66 4.85 92.76
NECEvent2014_4_5_scaffold_2673 174_005_scaffold_2673
Species: Enterorhabdus caecimuris (50%)
2 1938 bp 57.69 5.65 92.72
NECEvent2014_4_5_scaffold_2035 174_005_scaffold_2035
Species: Eggerthella lenta (100%)
3 2841 bp 66.21 4.80 92.71
NECEvent2014_4_5_scaffold_1593 174_005_scaffold_1593
Species: Eggerthella lenta (100%)
3 4019 bp 67.75 5.11 92.71
NECEvent2014_4_5_scaffold_1507 174_005_scaffold_1507
Domain: Bacteria (66.67%)
3 4373 bp 66.00 4.42 92.68
NECEvent2014_4_5_scaffold_3030 174_005_scaffold_3030
Species: Eggerthella lenta (66.67%)
3 1596 bp 66.48 4.14 92.67
NECEvent2014_4_5_scaffold_2752 174_005_scaffold_2752
Species: Peptoclostridium difficile (66.67%)
3 1852 bp 64.20 6.88 92.66
NECEvent2014_4_5_scaffold_1455 174_005_scaffold_1455
Species: Eggerthella lenta (50%)
4 4557 bp 66.05 5.00 92.63
Displaying items 351-400 of 990 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.