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NECEvent2014_4_6_scaffold_460_8

Organism: NECEvent2014_4_6_Actinomyces_59_150

near complete RP 51 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(7004..7921)

Top 3 Functional Annotations

Value Algorithm Source
LysR substrate binding domain protein n=3 Tax=Gardnerella vaginalis RepID=D2RCJ8_GARV4 similarity UNIREF
DB: UNIREF100
  • Identity: 55.3
  • Coverage: 291.0
  • Bit_score: 334
  • Evalue 8.70e-89
  • rbh
lysR; LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 55.3
  • Coverage: 291.0
  • Bit_score: 334
  • Evalue 2.50e-89
LysR substrate binding domain protein {ECO:0000313|EMBL:ADB13983.1}; TaxID=553190 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Gardnerella.;" source="Gardnerella vaginalis similarity UNIPROT
DB: UniProtKB
  • Identity: 55.3
  • Coverage: 291.0
  • Bit_score: 334
  • Evalue 1.20e-88

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Taxonomy

Gardnerella vaginalis → Gardnerella → Bifidobacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 918
GTGAGGAACGTTCGGGCCCTGGAGTATCTTGTCGCGTTGGATGAGGAGCGGAACTTCACGCGTGCTGCTCAGCGTGCTCACGTTTCGCAGCCGACGCTGTCAGCGCAGGTCAAGAAGCTGGAGGAGGAATTGGGAGCCCAGCTGGTTGAACGCGGAACGCAGCAGGTGCTGATCACCCCGGTTGGCCGTGACGTTGTCTACTATGCGCGTCGCATCCTCACTGACCTGGACCACATTGAGCAGGTCGGTCGCAGCGGATCGAATCCTCTGGCCGCCACCGTCGCCATCGGCGTATTCCCGACGATTGCACCCTACCTTTTGCCGCGCTTTGCGCCCGAACTTGGGAAAGCGCTGCCAGACCTGACCGCCCATTTCGTCGAGGAAAAGTCCCTCGCACTCATGGACGCGCTTGCATCCGGCAGAATTGACGCGGCTGTTCTGGCGGATACGTCTGCGGAGTCGGGCCTGACCGTGGCGCACCTTTTTGACGAGGATTTCGTGCTGGCAACCTCGAGCACGTCAGCCCTAGGCGAGCAAACCACGCCCGTTGACTTGGGCGATTTGGCCGGTCACGAGGTGATTCTGCTTGAAGAAGGACACTGCATGCGTCGCAGCACGGTCAGCATCTGCGAAAAAGTCGGTGCCCGCCAGTCAGCCTTCCGCGCCACGTCGCTCGAGACGCTGCGCTACATGGTCGCAGCCGGGAGCGGAGTGACGCTGCTGCCTCGGCTGGCGACGATCCCTCCGATCGCGCAACCCGACGGTCTGGTTCTTCGCGAGTTCTGCCCGCCGCGCCCCTACCGCTCCATCAACCTGGTATGGCGTCGATCCAGCCCGCTGGACGAGCTCAACGCCACCATTGCTGACCTGATCAGCTCACTGGTCGCACCTGTCTCTCATGCAACGGAGGAGCAGTGA
PROTEIN sequence
Length: 306
VRNVRALEYLVALDEERNFTRAAQRAHVSQPTLSAQVKKLEEELGAQLVERGTQQVLITPVGRDVVYYARRILTDLDHIEQVGRSGSNPLAATVAIGVFPTIAPYLLPRFAPELGKALPDLTAHFVEEKSLALMDALASGRIDAAVLADTSAESGLTVAHLFDEDFVLATSSTSALGEQTTPVDLGDLAGHEVILLEEGHCMRRSTVSICEKVGARQSAFRATSLETLRYMVAAGSGVTLLPRLATIPPIAQPDGLVLREFCPPRPYRSINLVWRRSSPLDELNATIADLISSLVAPVSHATEEQ*