ggKbase home page

NECEvent2014_4_6_scaffold_2898_2

Organism: NECEvent2014_4_6_Clostridum_7_2_43FAA-rel_29_6_partial

partial RP 15 / 55 MC: 1 BSCG 13 / 51 ASCG 9 / 38 MC: 3
Location: 1172..1573

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-K factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HET3_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 95.5
  • Coverage: 134.0
  • Bit_score: 253
  • Evalue 1.10e-64
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.8
  • Coverage: 134.0
  • Bit_score: 252
  • Evalue 4.60e-64
sigK; sporulation sigma factor SigK similarity KEGG
DB: KEGG
  • Identity: 81.3
  • Coverage: 134.0
  • Bit_score: 220
  • Evalue 2.30e-55

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 402
GTGTTTTTTTTATCTAATATAATTGAACTGCTATGTAATTCAATATTTTTAACAGGTTATATTACTGGCAATAATACATTTCCAAAACCACTTGATGAAGAAGAGGAAGAACGATATTTAAAACTATTAAAAAATGGAGATAAGGAAGCTAAGAGCATATTAATAGAAAGAAATTTAAGATTAGTGGCTCATATTGTAAAGAAATATAATTTTCCTAATAAGGATATTGATGAATTGATATCTATAGGCACAGTTGGACTGATAAAGGCTATAGATTCATTTGATGCGGGTAAGGGTACTAGACTTGCTACTTATGCATCAAGATGCATAGAAAACGAAATTTTAATGCTTTTTAGAAATAATAAGAAACAAAACAATGAAGTGTTTTTACAGGACCCTATA
PROTEIN sequence
Length: 134
VFFLSNIIELLCNSIFLTGYITGNNTFPKPLDEEEEERYLKLLKNGDKEAKSILIERNLRLVAHIVKKYNFPNKDIDELISIGTVGLIKAIDSFDAGKGTRLATYASRCIENEILMLFRNNKKQNNEVFLQDPI