ggKbase | organisms

NECEvent2014_4_7_UNK

In projects: NECEvent2014_4_7

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.08 Longest contig: 22.98 Kbp Bin length: 883.64 Kbp GC content: 43.02 %

Contigs count: 316 Features count: 1097 rRNAs count: 3 tRNAs count: 11

Genome completeness

partial RP 1 / 55 BSCG 0 / 51 ASCG 3 / 38

Displaying items 201-250 of 316 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
NECEvent2014_4_7_scaffold_4735 174_007_scaffold_4735 Species: Enterococcus faecalis (100%)	2	1218 bp	37.11	2.22	100.25
NECEvent2014_4_7_scaffold_4224 174_007_scaffold_4224 Species: Haemophilus influenzae (100%)	2	1396 bp	43.12	6.02	95.63
NECEvent2014_4_7_scaffold_4994 174_007_scaffold_4994 Species: Brochothrix thermosphacta (50%)	2	1137 bp	25.59	4.22	82.06
NECEvent2014_4_7_scaffold_3729 174_007_scaffold_3729 Species: Bifidobacterium longum (50%)	2	1628 bp	44.84	3.87	100.25
NECEvent2014_4_7_scaffold_2450 174_007_scaffold_2450 Species: Anaerococcus vaginalis (50%)	2	2654 bp	27.54	4.69	99.13
NECEvent2014_4_7_scaffold_4489 174_007_scaffold_4489 Species: Anaerococcus hydrogenalis (50%)	2	1298 bp	25.04	4.85	77.66
NECEvent2014_4_7_scaffold_3990 174_007_scaffold_3990 Species: Klebsiella variicola (50%)	2	1493 bp	54.92	17.48	98.66
NECEvent2014_4_7_scaffold_3735 174_007_scaffold_3735 Species: Desulfosporosinus acidiphilus (50%)	2	1625 bp	40.49	4.52	89.72
NECEvent2014_4_7_scaffold_3993 174_007_scaffold_3993 Species: Streptococcus pseudoporcinus (50%)	2	1492 bp	29.42	4.83	100.54
NECEvent2014_4_7_scaffold_4497 174_007_scaffold_4497 Species: Syntrophomonas zehnderi (50%)	2	1297 bp	45.41	4.74	63.61
NECEvent2014_4_7_scaffold_5254 174_007_scaffold_5254 Species: Klebsiella pneumoniae (100%)	2	1061 bp	47.50	288.12	44.39
NECEvent2014_4_7_scaffold_4754 174_007_scaffold_4754 Species: Pantoea ananatis (50%)	2	1211 bp	55.24	301.24	89.93
NECEvent2014_4_7_scaffold_2210 174_007_scaffold_2210 Species: Anaerococcus hydrogenalis (50%)	2	2965 bp	37.10	9.76	68.20
NECEvent2014_4_7_scaffold_5516 174_007_scaffold_5516 Species: Enterococcus faecalis (50%)	2	1002 bp	46.71	613.92	31.04
NECEvent2014_4_7_scaffold_5262 174_007_scaffold_5262 Species: Haemophilus haemolyticus (50%)	2	1060 bp	39.81	4.10	88.87
NECEvent2014_4_7_scaffold_5520 174_007_scaffold_5520 Species: Yersinia mollaretii (50%)	2	1000 bp	55.90	5.85	89.70
NECEvent2014_4_7_scaffold_5522 174_007_scaffold_5522 Species: Eubacterium saphenum (50%)	2	1000 bp	25.30	4.50	75.30
NECEvent2014_4_7_scaffold_3499 174_007_scaffold_3499 Species: Klebsiella variicola (100%)	2	1751 bp	43.63	7.02	31.01
NECEvent2014_4_7_scaffold_5015 174_007_scaffold_5015 Species: Klebsiella pneumoniae (100%)	2	1131 bp	56.15	5.04	96.82
NECEvent2014_4_7_scaffold_3504 174_007_scaffold_3504 Species: Eggerthella lenta (100%)	2	1743 bp	52.73	2.50	100.17
NECEvent2014_4_7_scaffold_5274 174_007_scaffold_5274 Species: Anaerococcus vaginalis (100%)	2	1057 bp	25.45	5.96	98.20
NECEvent2014_4_7_scaffold_2486 174_007_scaffold_2486 Species: Bacillus thuringiensis (50%)	2	2609 bp	25.64	4.89	94.52
NECEvent2014_4_7_scaffold_4269 174_007_scaffold_4269 Species: Enterococcus faecalis (50%)	2	1378 bp	31.06	4.90	98.40
NECEvent2014_4_7_scaffold_4529 174_007_scaffold_4529 Species: Lachnospiraceae bacterium 8_1_57FAA (50%)	2	1287 bp	39.47	2.80	101.87
NECEvent2014_4_7_scaffold_4789 174_007_scaffold_4789 Species: Proteus mirabilis (50%)	2	1202 bp	53.33	8.74	85.36
NECEvent2014_4_7_scaffold_2755 174_007_scaffold_2755 Species: Eggerthella lenta (100%)	2	2317 bp	52.91	3.69	99.70
NECEvent2014_4_7_scaffold_2514 174_007_scaffold_2514 Species: Geobacillus sp. MAS1 (50%)	2	2575 bp	26.37	4.54	85.05
NECEvent2014_4_7_scaffold_2771 174_007_scaffold_2771 Species: Peptostreptococcaceae bacterium CM2 (50%)	2	2295 bp	31.72	5.88	93.59
NECEvent2014_4_7_scaffold_2773 174_007_scaffold_2773	2	2294 bp	59.42	75.20	7.59
NECEvent2014_4_7_scaffold_5309 174_007_scaffold_5309 Species: Enterococcus faecalis (50%)	2	1048 bp	32.73	4.29	83.30
NECEvent2014_4_7_scaffold_3288 174_007_scaffold_3288 Species: Salmonella enterica (50%)	2	1872 bp	38.14	5.05	92.79
NECEvent2014_4_7_scaffold_4046 174_007_scaffold_4046 Species: Anaerococcus tetradius (50%)	2	1468 bp	29.63	4.09	101.77
NECEvent2014_4_7_scaffold_3551 174_007_scaffold_3551 Species: Escherichia coli (50%)	2	1717 bp	61.44	6.64	81.60
NECEvent2014_4_7_scaffold_5327 174_007_scaffold_5327 Species: Haemophilus haemolyticus (50%)	2	1045 bp	42.49	4.31	95.31
NECEvent2014_4_7_scaffold_4059 174_007_scaffold_4059 Species: Peptoniphilus sp. oral taxon 375 (50%)	2	1464 bp	35.66	4.30	99.59
NECEvent2014_4_7_scaffold_4315 174_007_scaffold_4315 Species: Clostridiales bacterium S7-1-4 (50%)	2	1357 bp	27.71	4.64	89.54
NECEvent2014_4_7_scaffold_1773 174_007_scaffold_1773 Species: Morganella morganii (50%)	2	3722 bp	54.86	5.12	99.54
NECEvent2014_4_7_scaffold_2798 174_007_scaffold_2798 Species: Peptoniphilus sp. oral taxon 375 (50%)	2	2268 bp	34.48	5.03	88.62
NECEvent2014_4_7_scaffold_1266 174_007_scaffold_1266 Species: Finegoldia magna (50%)	2	5096 bp	37.40	7.54	95.43
NECEvent2014_4_7_scaffold_5338 174_007_scaffold_5338 Species: Enterococcus faecalis (100%)	2	1043 bp	39.31	2.88	93.48
NECEvent2014_4_7_scaffold_3060 174_007_scaffold_3060 Species: Klebsiella pneumoniae (50%)	2	2040 bp	54.95	4.49	96.62
NECEvent2014_4_7_scaffold_3573 174_007_scaffold_3573 Species: Klebsiella pneumoniae (50%)	2	1709 bp	40.61	8.25	72.67
NECEvent2014_4_7_scaffold_2806 174_007_scaffold_2806 Species: Escherichia coli (50%)	2	2255 bp	54.94	5.72	84.21
NECEvent2014_4_7_scaffold_3318 174_007_scaffold_3318 Species: Anaerococcus hydrogenalis (50%)	2	1852 bp	30.56	6.97	86.50
NECEvent2014_4_7_scaffold_2808 174_007_scaffold_2808 Species: Raoultella ornithinolytica (50%)	2	2252 bp	41.12	5.26	69.01
NECEvent2014_4_7_scaffold_4332 174_007_scaffold_4332 Species: Klebsiella variicola (50%)	2	1352 bp	40.68	6.43	70.78
NECEvent2014_4_7_scaffold_4590 174_007_scaffold_4590 Species: Klebsiella quasipneumoniae (100%)	2	1264 bp	29.19	4.39	96.12
NECEvent2014_4_7_scaffold_2818 174_007_scaffold_2818 Species: Klebsiella variicola (50%)	2	2245 bp	59.06	6.35	97.28
NECEvent2014_4_7_scaffold_3074 174_007_scaffold_3074 Species: Trichuris trichiura (50%)	2	2029 bp	47.17	41.77	27.80
NECEvent2014_4_7_scaffold_3849 174_007_scaffold_3849 Species: Peptoniphilus sp. 1-1 (50%)	2	1566 bp	49.43	203.07	16.28

Displaying items 201-250 of 316 in total

NECEvent2014_4_7_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

NECEvent2014_4_7_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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