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NECEvent2014_4_7_scaffold_1273_3

Organism: NECEvent2014_4_7_Clostridium_perfringens_28_5

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 2 ASCG 15 / 38 MC: 2
Location: comp(1389..2144)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=10 Tax=Clostridium perfringens RepID=H7CY74_CLOPF similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 251.0
  • Bit_score: 488
  • Evalue 5.10e-135
  • rbh
sigF; sporulation sigma factor SigF similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 251.0
  • Bit_score: 488
  • Evalue 1.40e-135
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE s similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 251.0
  • Bit_score: 488
  • Evalue 7.10e-135

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Taxonomy

Clostridium perfringens → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 756
ATGGATATAAGTAGTATTGAGAAAGATAATTTTAATTATGACAAAAATACAACTCTCATAGTCATGGCTAAAGAAGGAAATAAGGAAGCAATGAATAAGCTTATAGAAGTTAATACTCCTTTAGTCTCTTCAATATGCAAGAGATTTACAAATAGAGGGTATGACTATGAGGATATATTTCAGATTGGGTCAATGGGATTAGTTAAAGCTATAAACAACTTTAATGATAGTTTTAATGTTAAATTTTCAACTTATGCTGTGCCTATGATTATAGGTGAAATAAAGAGATTCTTAAGGGATGATGGAATAATAAAGGTAAGTAGAAGCACTAAGACTTTAGCTAAAAAGCTTCATTACAATAAGGAAGAACTAATAAAAAAATTAAATAGGGATCCTACTGTAGATGAATTAGCTGAATACTCTGGTGTTGATAAGGAAGAGGTAATAGTAGCCCTAGAATCAGCAAGTAGTATGCAATATCTATATGATACTATACACCATGATGAAGGAACGCCGGTTCTCTTAATAGATAAACTTAGTGAGAAGGGTGAAGATGATGACATGGTTAATAAAATAGCTTTAAGAGAGGCTATTAGTTCATTAGATTCAAAGGGTAAGCAAATCATAATGCTTAGGTATTTCAAGGATAAAACTCAAATTCAAGTTGCAAAAATGCTTGGTATAAGTCAAGTTCAAGTTTCTAGAATAGAGAAAAAGGTACTAAAAATTATGAAAGAAAAATTAGAAGAGGATTGA
PROTEIN sequence
Length: 252
MDISSIEKDNFNYDKNTTLIVMAKEGNKEAMNKLIEVNTPLVSSICKRFTNRGYDYEDIFQIGSMGLVKAINNFNDSFNVKFSTYAVPMIIGEIKRFLRDDGIIKVSRSTKTLAKKLHYNKEELIKKLNRDPTVDELAEYSGVDKEEVIVALESASSMQYLYDTIHHDEGTPVLLIDKLSEKGEDDDMVNKIALREAISSLDSKGKQIIMLRYFKDKTQIQVAKMLGISQVQVSRIEKKVLKIMKEKLEED*