ggKbase home page

NECEvent2014_4_7_scaffold_641_7

Organism: NECEvent2014_4_7_Clostridium_7_2_43FAA-rel_28_17_lowerCov

near complete RP 48 / 55 MC: 6 BSCG 46 / 51 MC: 5 ASCG 15 / 38 MC: 2
Location: comp(7307..7846)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V3N4_CLOBA similarity UNIREF
DB: UNIREF100
  • Identity: 47.5
  • Coverage: 181.0
  • Bit_score: 167
  • Evalue 1.10e-38
RNA polymerase sigma factor SigZ {ECO:0000313|EMBL:KIL80177.1}; TaxID=1455 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus badius.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.7
  • Coverage: 179.0
  • Bit_score: 176
  • Evalue 4.20e-41
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 47.5
  • Coverage: 181.0
  • Bit_score: 167
  • Evalue 3.00e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Bacillus badius → Bacillus → Bacillales → Bacilli → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 540
ATGGATGATTCAATAATTATAAAAAGTATTAAAAATAAAGATGAAATTGGAATCGAATTATTATTGAAGAGCTATGGAGGATTGATAAAATCAATAGTGAAACATCACTTAAAGGATATTTCATTTTATGAAGAGGAATGTATAAATGATATTCTCTTTTCAATTTGGAATAATATAAGTCTTTTTAATGAAACTGGTTCTTTTAAAAATTGGGTTGCTATAATTTCTAAATTTAAATCAATTGATTATAAACGTAAATATTTAAAGTTAAATTCAATTTTAGATATAGATGAAATTGATATATCAGATAATAAAGGTTCAGTTGAAGAAATAGTAATTTATAATGAATTCAAAGAAGAAGTAAAAGAACTATTAAGTAATTTAAAGAATATAGATAAAGAGCTCTTTATTAAGTATTATTTAGAAAATAAAAATATAATTGACATATCAAGAGAAATGAACATGAAAAGTTATCAAATATATAATAGGCTATCAAGAGGACGAAAGAAACTTAGTAGCATTTTAAAAGAAATATATTAA
PROTEIN sequence
Length: 180
MDDSIIIKSIKNKDEIGIELLLKSYGGLIKSIVKHHLKDISFYEEECINDILFSIWNNISLFNETGSFKNWVAIISKFKSIDYKRKYLKLNSILDIDEIDISDNKGSVEEIVIYNEFKEEVKELLSNLKNIDKELFIKYYLENKNIIDISREMNMKSYQIYNRLSRGRKKLSSILKEIY*